Sources: 12Gene Ontology See all sources |
Cellular components related to cholestasis according to GeneDecks: (show all 12)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | integral to lumenal side of endoplasmic reticulum membrane | GO:071556 | 10.9 | HLA-G, HLA-E, HLA-DRB1, HLA-DQB1, HLA-DQA1, HLA-DPA1 | | 2 | ER to Golgi transport vesicle membrane | GO:012507 | 10.8 | HLA-G, HLA-E, HLA-DRB1, HLA-DQB1, HLA-DQA1, HLA-DPA1 | | 3 | basolateral plasma membrane | GO:016323 | 10.4 | SLC23A2, SLCO1B1, SLC10A1, SLCO1B3, SLC4A2, SLC22A6 | | 4 | integral to plasma membrane | GO:005887 | 10.2 | SLC22A1, OPRK1, OPRD1, ABCC3, ABCC2, ABCC1 | | 5 | membrane | GO:016020 | 9.9 | SLC22A1, ABCC4, ABCC3, ABCC1, ABCB4, ABCB11 | | 6 | platelet alpha granule lumen | GO:031093 | 9.4 | TGFB2, ALB, F5, IGF1, FGA, CLU | | 7 | endoplasmic reticulum membrane | GO:005789 | 9.3 | CYP7B1, CYP4X1, CYP17A1, CYP3A5, CYP2J2, NR3C2 | | 8 | nucleoplasm | GO:005654 | 8.9 | SMAD2, NR3C2, NR1I3, NR1I2, SMAD7, NOTCH2 | | 9 | plasma membrane | GO:005886 | INF | OPRD1, SLC23A2, SLC23A1, GGT1, GGT2, SLC22A2 | | 10 | extracellular space | GO:005615 | INF | GCG, RBP4, SERPINC1, SERPINA1, VEGFA, LPL | | 11 | extracellular region | GO:005576 | INF | SHBG, NOTCH2, CRH, ESR2, CALCA, ALB | | 12 | high-density lipoprotein particle | GO:034364 | INF | , CETP, LCAT, LIPC, APOE |
Biological processes related to cholestasis according to GeneDecks: (show all 43)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | bile acid metabolic process | GO:008206 | 11.3 | ATP8B1, SLC10A1, SLCO1B1, SLC10A2, SLCO1B3, FABP6 | | 2 | organic anion transport | GO:015711 | 11.2 | SLCO1B1, SLC10A1, SLC10A2, SLCO1B3, SLC22A6, SLCO1A2 | | 3 | interferon-gamma-mediated signaling pathway | GO:060333 | 11.1 | SOCS3, HLA-G, HLA-E, HLA-DRB1, HLA-DQB1, HLA-DQA1 | | 4 | bile acid biosynthetic process | GO:006699 | 11.1 | ABCB11, CYP27A1, CYP7B1, CYP8B1, CYP7A1, AKR1D1 | | 5 | very-low-density lipoprotein particle remodeling | GO:034372 | 11.0 | APOE, CETP, LCAT, LIPC, LPL | | 6 | drug transmembrane transport | GO:006855 | 10.8 | SLC22A2, SLC22A3, SLC22A1, ABCG2, ABCB1 | | 7 | sodium-independent organic anion transport | GO:043252 | 10.7 | SLCO1B1, SLCO4A1, SLCO1B3, SLCO1C1, SLC22A6, SLCO1A2 | | 8 | xenobiotic metabolic process | GO:006805 | 10.6 | CYP7B1, CYP17A1, CYP27A1, CYP3A5, CYP2J2, NR1I2 | | 9 | release of cytochrome c from mitochondria | GO:001836 | 10.6 | TP53, CCK, BAX, BCL2, CLU, MYC | | 10 | response to glucose stimulus | GO:009749 | 10.5 | ADIPOQ, HIF1A, SMAD2, NR1H4, NR0B2, HNF4A | | 11 | exogenous drug catabolic process | GO:042738 | 10.5 | NR1I2, CYP2C19, CYP2B6, CYP2A6, CYP3A4 | | 12 | transcription initiation from RNA polymerase II promoter | GO:006367 | 10.4 | NR1I2, NR1I3, NR3C2, SMAD2, SMAD7, NOTCH2 | | 13 | oxidation-reduction process | GO:055114 | 10.4 | G6PD, CYP2C19, CYP2B6, CYP3A4, CYP1B1, CYP1A1 | | 14 | transport | GO:006810 | 10.3 | ABCC3, ABCG2, TTR, SLC51A, SLC10A2, SLC10A1 | | 15 | organ regeneration | GO:031100 | 10.2 | AFP, SOCS3, AHSG, NR0B2, CCND1, MKI67 | | 16 | negative regulation of macrophage derived foam cell differentiation | GO:010745 | 10.2 | ADIPOQ, NR1H2, PPARA, ITGAV, CETP | | 17 | cytokine-mediated signaling pathway | GO:019221 | 10.2 | HLA-DRB1, HLA-E, HLA-G, STAT3, SOCS3, HLA-DQB1 | | 18 | response to lipopolysaccharide | GO:032496 | 10.1 | SOCS3, TAC1, EDN1, NR1H4, ALPL, F2R | | 19 | response to estradiol stimulus | GO:032355 | 10.1 | SOCS3, STAT3, TGFB2, CTNNB1, ESR1, F3 | | 20 | steroid metabolic process | GO:008202 | 10.1 | CYP3A5, CYP17A1, CYP2C19, CYP2B6, CYP2A6, CYP3A4 | | 21 | acute-phase response | GO:006953 | 9.9 | STAT3, AHSG, F2, IL6, ASS1, SERPINA1 | | 22 | positive regulation of cell migration | GO:030335 | 9.9 | ABCC1, EDN1, ONECUT1, F2RL1, F2R, F3 | | 23 | cell surface receptor signaling pathway | GO:007166 | 9.7 | PRLR, EDN1, TNFRSF10B, CABIN1, F2, IFNA2 | | 24 | bile acid and bile salt transport | GO:015721 | 9.7 | ATP8B1, FABP6, ALB, ABCB11, ABCC3, SLC51A | | 25 | response to ethanol | GO:045471 | 9.6 | ADIPOQ, STAT3, RXRA, GOT2, CCND1, AVP | | 26 | response to hypoxia | GO:001666 | 9.4 | TGFB2, DPP4, SOCS3, ADIPOQ, EPAS1, HIF1A | | 27 | response to glucocorticoid stimulus | GO:051384 | 9.4 | TNF, RXRA, ABCB4, SOCS3, ADIPOQ, HSD11B2 | | 28 | response to drug | GO:042493 | 9.3 | CTNNB1, EDN1, ABCB1, ABCB4, ABCC1, ABCG2 | | 29 | positive regulation of cell proliferation | GO:008284 | 9.0 | F2, F2R, GLP1R, EDN1, TGFB2, DPP4 | | 30 | negative regulation of apoptotic process | GO:043066 | 8.8 | GLP1R, HNF1B, TP53, TNF, TGFB2, PRKAA2 | | 31 | positive regulation of transcription from RNA polymerase II promoter | GO:045944 | 8.1 | SMAD2, NR1H4, NR1H2, PPARA, CTNNB1, SMAD7 | | 32 | cholesterol metabolic process | GO:008203 | INF | RXRA, NR0B2, CYP27A1, CYP7B1, APOE, | | 33 | lipoprotein metabolic process | GO:042157 | INF | PPARA, ALB, APOE, , CETP, LCAT | | 34 | triglyceride homeostasis | GO:070328 | INF | HNF4A, , CETP, LIPC, LPL | | 35 | high-density lipoprotein particle remodeling | GO:034375 | INF | APOE, , CETP, LCAT, LIPC | | 36 | cellular lipid metabolic process | GO:044255 | INF | HADHA, PRKAA2, ABCB4, RXRA, NR1H2, PPARA | | 37 | platelet activation | GO:030168 | INF | F2, F2R, ALB, ABCC4, TGFB2, F5 | | 38 | platelet degranulation | GO:002576 | INF | F5, ALB, ABCC4, TGFB2, IGF1, | | 39 | transmembrane transport | GO:055085 | INF | AVP, ABCG2, SLC22A1, SLC22A3, SLC22A8, SLCO1A2 | | 40 | lipid metabolic process | GO:006629 | INF | HNF4A, CYP3A4, PPARA, ABCB4, G6PD, ALB | | 41 | reverse cholesterol transport | GO:043691 | INF | APOE, , CETP, LCAT, CLU, LIPC | | 42 | small molecule metabolic process | GO:044281 | INF | NCOA6, GLP1R, AKR1D1, CYP7A1, CYP1A1, CYP1B1 | | 43 | blood coagulation | GO:007596 | INF | F2, F2R, F2RL1, ALB, HNF4A, TP53 |
Molecular functions related to cholestasis according to GeneDecks: (show all 21)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | organic anion transmembrane transporter activity | GO:008514 | 11.0 | SLCO1B3, SLC22A6, SLCO1A2, SLC22A8, ABCC3, ABCC2 | | 2 | ATPase activity, coupled to transmembrane movement of substances | GO:042626 | 10.9 | ABCG2, ABCD4, ABCC4, ABCC3, ABCC2, ABCC1 | | 3 | xenobiotic-transporting ATPase activity | GO:008559 | 10.8 | ABCG2, ABCC1, ABCB4, ABCB1 | | 4 | steroid hormone receptor activity | GO:003707 | 10.6 | RXRA, NR3C2, NR1I2, NR1H4, NR1H2, NR0B2 | | 5 | ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity | GO:004879 | 10.5 | STAT3, RXRA, NR1I3, NR1I2, NR1H4, NR1H2 | | 6 | steroid binding | GO:005496 | 10.5 | NR3C2, CYP3A4, ESR2, ESR1, AKR1D1, HSD11B2 | | 7 | aromatase activity | GO:070330 | 10.4 | CYP2J2, CYP3A5, CYP4X1, CYP3A43, CYP1B1, CYP1A1 | | 8 | heme binding | GO:020037 | 10.4 | MPO, ABCB6, CYP2J2, CYP3A5, CYP27A1, CYP17A1 | | 9 | iron ion binding | GO:005506 | 10.3 | CYP7B1, CYP4X1, CYP17A1, CYP27A1, CYP3A5, CYP2J2 | | 10 | electron carrier activity | GO:009055 | 10.3 | CYP7B1, CYP4X1, CYP17A1, CYP27A1, CYP3A5, CYP2J2 | | 11 | oxygen binding | GO:019825 | 10.3 | CYP3A5, CYP17A1, CYP8B1, CYP2C19, CYP3A4, CYP1B1 | | 12 | monooxygenase activity | GO:004497 | 10.1 | CYP3A5, CYP2C19, CYP2B6, CYP3A43, CYP3A4, CYP1B1 | | 13 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavopr | GO:016712 | 10.0 | CYP2B6, CYP2A6, CYP3A4, CYP1B1 | | 14 | sequence-specific DNA binding | GO:043565 | 9.8 | NR1I2, NR1I3, NR3C2, RXRA, NFE2L2, HIF1A | | 15 | receptor binding | GO:005102 | 9.7 | HNF4A, HLA-B, HLA-G, CRH, TGFB2, DPP4 | | 16 | hormone activity | GO:005179 | 9.6 | HAMP, ADIPOQ, POMC, TTR, EDN1, CRH | | 17 | protease binding | GO:002020 | 9.4 | DPP4, TNF, TP53, F3, BCL2, SERPINA1 | | 18 | protein homodimerization activity | GO:042803 | 9.0 | NR0B2, SHBG, ABCG2, G6PD, TGFB2, DPP4 | | 19 | protein heterodimerization activity | GO:046982 | 8.7 | RXRA, HIF1A, TGFB2, SLC51A, SLC51B, EPAS1 | | 20 | protein binding | GO:005515 | INF | NR1H2, NR1H4, NR1I2, NR3C2, SMAD2, SMAD7 | | 21 | enzyme binding | GO:019899 | INF | CYP2A6, CYP2C19, CTNNB1, RXRA, ACIN1, HIF1A |
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