CHM
MCID: CHR081
MIFTS: 63

Choroideremia (CHM) malady

Genetic diseases, Rare diseases, Eye diseases categories

Summaries for Choroideremia

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44NIH Rare Diseases, 66Wikipedia, 48OMIM, 20GeneReviews, 34MalaCards
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NIH Rare Diseases:44 Choroideremia is a genetic condition characterized by progressive vision loss that mainly affects males. signs and symptoms of this condition includeĀ night blindness,Ā progressive narrowing of the field of vision (tunnel vision), andĀ a decrease in the ability to see details (visual acuity). these vision problems are due to an ongoing loss of cells in the retina and choroid. the vision impairments get progressively worse and usually lead to blindness typically in late adulthood. choroideremiaĀ is caused by mutations in the chm gene and is inherited in an x-linked recessive pattern. last updated: 4/22/2011

MalaCards: Choroideremia, also known as progressive tapetochoroidal dystrophy, is related to blindness and retinal degeneration, and has symptoms including myopia, night blindness/hemeralopia and x-linked recessive inheritance. An important gene associated with Choroideremia is CHM (choroideremia (Rab escort protein 1)), and among its related pathways are wtCFTR and deltaF508 traffic Late endosome and Lysosome norm and CF and Signaling events mediated by PRL. The compounds geranylgeranyl pyrophosphate and geranylgeranyl diphosphate have been mentioned in the context of this disorder. Affiliated tissues include eye, retina and testes, and related mouse phenotype pigmentation.

Wikipedia:66 Choroideremia /k??r??d??ri?mi.?/ is an X-linked recessive retinal degenerative disease that leads to the... more...

Description from OMIM:48 303100

GeneReviews summary for choroid

Aliases & Classifications for Choroideremia

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9Disease Ontology, 10diseasecard, 20GeneReviews, 44NIH Rare Diseases, 21GeneTests, 23GTR, 22Genetics Home Reference, 48OMIM, 11DISEASES, 46Novoseek, 50Orphanet, 63UMLS, 41NCIt, 28ICD9CM, 36MeSH, 59SNOMED-CT, 37MESH via Orphanet, 27ICD10 via Orphanet, 60SNOMED-CT via Orphanet, 64UMLS via Orphanet
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Classifications:

Malacards categories (disease lists): (See all malacards categories)
Global: Genetic diseases, Rare diseases
Anatomical: Eye diseases
Orphanet: 50 
Rare eye diseases


Characteristics (Orphanet epidemiological data):

50
choroideremia:
Inheritance: X-linked recessive; Prevalence: 1-9/100000; Age of onset: Adolescence / Young adulthood; Age of death: Normal


Aliases & Descriptions:

choroideremia 9 10 20 44 21 23 22 48 11 46 50 63
progressive tapetochoroidal dystrophy 44 22
chm 44 50
tcd 44 22
central areolar choroidal sclerosis 63
chorea acanthocytosis syndrome 63
progressive choroidal atrophy 9
tapetochoroidal dystrophy 50
choroidal sclerosis 22


External Ids:

Disease Ontology9 DOID:9821
NCIt41 C34469
ICD9CM28 363.55
OMIM48 303100
MeSH36 D015794
SNOMED-CT59 75241009
MESH via Orphanet37 D015794
ICD10 via Orphanet27 H31.2
SNOMED-CT via Orphanet60 75241009
UMLS via Orphanet64 C0008525

Related Diseases for Choroideremia

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18GeneCards, 19GeneDecks
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Diseases related to Choroideremia via text searches within MalaCards or GeneCards/GeneDecks gene sharing:

(show top 50)    (show all 65)
idRelated DiseaseScoreTop Affiliating Genes
1blindness29.9SERPINF1, CHM, RPE65, AGFG1
2retinal degeneration29.8SERPINF1, CHM, RPE65, RAB6A, AGFG1
3retinitis10.6
4retinitis pigmentosa10.4
5sickle cell anemia10.4
6ayazi syndrome10.3
7mental retardation10.3
8choroideremia hypopituitarism10.2
9choroiditis10.2
10usher syndrome10.2
11choroideremia, deafness, and mental retardation10.2
12choriodal dystrophy, central areolar 210.2
13carotid stenosis10.2
14macular holes10.1
15vitelliform macular dystrophy10.1
16hypopituitarism10.1
17usher syndrome type ii10.1
18deafness, x-linked 210.1
19van den bosch syndrome10.1
20griscelli syndrome type 210.1AGFG1, RAB27A
21charcot-marie-tooth disease10.1RAB7A
22x-linked nonsyndromic deafness10.0RPS6KA6
23eye disease10.0CHM, SERPINF1
24pseudoxanthoma elasticum10.0
25localized scleroderma10.0
26partial central choroid dystrophy10.0
27scleroderma10.0
28cone-rod dystrophy 210.0RPE65, DNAJB12
29leber congenital amaurosis10.0SERPINF1, RPE65
30carotid artery dissection10.0
31migraine without aura10.0
32cerebritis10.0
33artery disease10.0
34carotid artery disease10.0
35migraine10.0
36aneurysm10.0
37atrial septal aneurysm10.0
38fundus dystrophy10.0RPE65, DNAJB12
39rhyns syndrome10.0SERPINF1, CHM, RPE65
40stargardt disease9.9
41bardet-biedl syndrome9.9
42gyrate atrophy9.9
43polydactyly9.9
44focal dermal hypoplasia9.9
45neuronitis9.9
46kearns-sayre syndrome9.9
47cystoid macular edema9.9
48posterior polar cataract9.9
49blau syndrome9.9
50cataract9.9

Graphical network of the top 20 diseases related to Choroideremia:



Diseases related to choroideremia

Symptoms for Choroideremia

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48OMIM, 50Orphanet
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Symptoms by clinical synopsis from OMIM:

303100

Clinical features from OMIM:

303100

Symptoms:

50 (show all 8)
  • myopia
  • night blindness/hemeralopia
  • x-linked recessive inheritance
  • abnormal erg/electroretinogram/electroretinography
  • anomalies of eyes and vision
  • visual loss/blindness/amblyopia
  • retinitis pigmentosa/retinal pigmentary changes
  • mild visual loss/impaired visual acuity

Drugs & Therapeutics for Choroideremia

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6CenterWatch, 43NIH Clinical Center, 7ClinicalTrials, 63UMLS, 42NDF-RT
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Approved drugs:

Search CenterWatch for Choroideremia

Drug clinical trials:

Search ClinicalTrials for Choroideremia

Search NIH Clinical Center for Choroideremia

Search CenterWatch for Choroideremia

Genetic Tests for Choroideremia

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21GeneTests, 23GTR
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Genetic tests related to Choroideremia:

id Genetic test Affiliating Genes
1 Choroideremia21 23 CHM

Anatomical Context for Choroideremia

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34MalaCards
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MalaCards organs/tissues related to Choroideremia:

34
Eye, Retina, Testes, Pituitary, Monocytes, Brain

Animal Models for Choroideremia or affiliated genes

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38MGI
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MGI Mouse Phenotypes related to Choroideremia:

38
idDescriptionMGI Source AccessionScoreTop Affiliating Genes
1MP:00011869.3RABGGTA, RAB27A, RPE65, CHM, SERPINF1

Publications for Choroideremia

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53PubMed
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Articles related to Choroideremia:

(show top 50)    (show all 199)
idTitleAuthorsYear
1
Rab GTPase Prenylation Hierarchy and Its Potential Role in Choroideremia Disease. (24358126)
2013
2
Clinical utility gene card for: Choroideremia. (23963298)
2013
3
Conditional ablation of the choroideremia gene causes age-related changes in mouse retinal pigment epithelium. (23460904)
2013
4
CHM/REP1 cDNA delivery by lentiviral vectors provides functional expression of the transgene in the retinal pigment epithelium of choroideremia mice. (22228595)
2012
5
Screening for a canine model of choroideremia exclusively identifies nonpathogenic CHM variants. (20861657)
2011
6
Retinal nerve fiber thickness measurements in choroideremia patients with spectral-domain optical coherence tomography. (21268676)
2011
7
Transition zones between healthy and diseased retina in choroideremia (CHM) and Stargardt disease (STGD) as compared to retinitis pigmentosa (RP). (22076985)
2011
8
Cystic macular oedema on spectral-domain optical coherence tomography in choroideremia patients without cystic changes on fundus examination. (20966974)
2011
9
Molecular analysis of the choroideremia gene related clinical findings in two families with choroideremia. (22025891)
2011
10
Fundus autofluorescence in carriers of choroideremia and correlation with electrophysiologic and psychophysical data. (19376587)
2009
11
CHM gene molecular analysis and X-chromosome inactivation pattern determination in two families with choroideremia. (19764077)
2009
12
Progression of retinal pigment epithelial alterations during long-term follow-up in female carriers of choroideremia and report of a novel CHM mutation. (19597113)
2009
13
Oliver-McFarlane syndrome (chorioretinopathy-pituitary dysfunction) with prominent early pituitary dysfunction: differentiation from choroideremia-hypopituitarism. (18978655)
2008
14
A novel mutation (967-970+2)delAAAGGT in the choroideremia gene found in a Japanese family and related clinical findings. (18773267)
2008
15
Syndromic choroideremia: sublocalization of phenotypes associated with Martin-Probst deafness mental retardation syndrome. (18487380)
2008
16
Clinical and functional findings in choroideremia due to complete deletion of the CHM gene. (17698759)
2007
17
Remodeling of the human retina in choroideremia: rab escort protein 1 (REP-1) mutations. (16936131)
2006
18
Clinical features of Japanese families with a 402delT or a 555-556delAG mutation in choroideremia gene. (15579993)
2004
19
Mutation of the zebrafish choroideremia gene encoding Rab escort protein 1 devastates hair cells. (14983050)
2004
20
Choroideremia gene testing. (15225095)
2004
21
Progression of defects in the central 10-degree visual field of patients with retinitis pigmentosa and choroideremia. (10218696)
1999
22
Length variations of the poly(T) tract at the exon 3 splice acceptor site of the choroideremia gene. (9894161)
1998
23
Unusual macular findings in a known choroideremia carrier. (9850276)
1998
24
Update on a diagnostic test for choroideremia: the protein truncation test (PTT)]. (9759428)
1998
25
Mouse choroideremia gene mutation causes photoreceptor cell degeneration and is not transmitted through the female germline. (9175730)
1997
26
Histopathology of the retinal pigment epithelium of a female carrier of choroideremia. (9276121)
1997
27
Molecular basis of choroideremia (CHM): mutations involving the Rab escort protein-1 (REP-1) gene. (9067750)
1997
28
Choroideremia with leukoencephalopathy and arylsulfatase A pseudodeficiency. (8791255)
1996
29
Human choroideremia protein contains a FAD-binding domain. (8630507)
1996
30
A highly polymorphic microsatellite marker located within the choroideremia gene. (8905853)
1996
31
Phenotype variations within a choroideremia family lacking the entire CHM gene. (8749050)
1995
32
Age differences of visual field impairment and mutation spectrum in Danish choroideremia patients. (7747574)
1994
33
Identification of mutations in Danish choroideremia families. (8477262)
1993
34
Attitudes towards prenatal diagnosis and selective abortion among patients with retinitis pigmentosa or choroideremia as well as among their relatives. (8500262)
1993
35
Retinal degeneration in choroideremia: deficiency of rab geranylgeranyl transferase. (8380507)
1993
36
A new (old) deletion in the choroideremia gene. (8242078)
1993
37
Choroideremia: linkage analysis with physically mapped close DNA-markers. (1677924)
1991
38
DXS165 detects a translocation breakpoint in a woman with choroideremia and a de novo X; 13 translocation. (2341150)
1990
39
Chromosomal jumping from the DXS165 locus allows molecular characterization of four microdeletions and a de novo chromosome X/13 translocation associated with choroideremia. (2798422)
1989
40
Choroideremia associated with a subretinal neovascular membrane. Case report. (2442805)
1987
41
Isolation of anonymous DNA sequences from within a submicroscopic X chromosomal deletion in a patient with choroideremia, deafness, and mental retardation. (3476958)
1987
42
Electroretinographic findings in selected pedigrees with choroideremia. (3953730)
1986
43
Differential diagnosis of diffuse choroidal atrophies. Diffuse choriocapillaris atrophy, choroideremia, and gyrate atrophy of the choroid and retina. (4001587)
1985
44
Choroideremia: a clinical, electron microscopic, and biochemical report. (6089068)
1984
45
Choroideremia (progressive chorioretinal degeneration). (5741530)
1968
46
The electroretinogram in choroideremia. (13228525)
1955
47
Choroideremia, its inheritance in a family. (13136407)
1952
48
Choroideremia. (13012548)
1952
49
Choroideremia; a hereditary and clinical study. (15401776)
1950
50
A hereditary and clinical study of choroideremia. (18901798)
1948

Variations for Choroideremia

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65UniProtKB/Swiss-Prot, 1 National Center for Biotechnology Information (Clinvar)
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UniProtKB/Swiss-Prot genetic disease variations for Choroideremia:

65
id Symbol AA change Variation ID SNP ID
1CHMp.Gln471LeuVAR_008273
2CHMp.His507ArgVAR_066847
3CHMp.Leu550ProVAR_066848

Clinvar genetic disease variations for Choroideremia:

1
id Gene Name Type Significance SNP ID Assembly Location
1CHMNM_000390.2(CHM): c.1358_1359delCCinsGA (p.Ser453Ter)indelPathogenicrs132630263GRCh37Chr X, 85155705: 85155706
2CHMNM_000390.2(CHM): c.1484C> A (p.Ser495Ter)single nucleotide variantPathogenicrs132630264GRCh37Chr X, 85149219: 85149219
3CHMNM_000390.2(CHM): c.1471G> T (p.Glu491Ter)single nucleotide variantPathogenicrs132630265GRCh37Chr X, 85149232: 85149232
4CHMCHM, 1-BP DEL, GGA146GA, FS159TERdeletionPathogenic
5CHMNM_000390.2(CHM): c.1584_1587delTGTT (p.Val529Hisfs)deletionPathogenicGRCh37Chr X, 85133992: 85133995
6CHMNM_000390.2(CHM): c.1497C> A (p.Cys499Ter)single nucleotide variantPathogenicrs132630267GRCh37Chr X, 85149206: 85149206
7CHMNM_000390.2(CHM): c.877C> T (p.Arg293Ter)single nucleotide variantPathogenicrs132630266GRCh37Chr X, 85212923: 85212923
8CHMCHM, L1 INSinsertionPathogenic
9CHMNM_000390.2(CHM): c.1520A> G (p.His507Arg)single nucleotide variantPathogenicrs397514603GRCh37Chr X, 85134059: 85134059
10CHMNM_000390.2(CHM): c.1609+2dupTduplicationPathogenicrs386833676GRCh37Chr X, 85133967: 85133968

Expression for genes affiliated with Choroideremia

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2BioGPS, 16Gene Expression Omnibus DataSets
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Expression patterns in normal tissues for genes affiliated with Choroideremia

Search GEO for disease gene expression data for Choroideremia.

Pathways for genes affiliated with Choroideremia

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51PathCards, 61Thomson Reuters, 39NCBI BioSystems Database, 13EMD Millipore, 54QIAGEN, 56Reactome, 5Cell Signaling Technology
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Compounds for genes affiliated with Choroideremia

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46Novoseek, 30IUPHAR, 12DrugBank, 25HMDB
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Compounds related to Choroideremia according to GeneCards/GeneDecks:

idCompoundScoreTop Affiliating Genes
1geranylgeranyl pyrophosphate469.8AGFG1, RAB7A, CHM
2geranylgeranyl diphosphate30 1210.8RABGGTA, RABGGTB
3phosphatidylinositol 3-phosphate469.7RAB5A, RAB7A
4farnesyl diphosphate46 30 1211.6AGFG1, RABGGTA, RABGGTB
5mannose 6-phosphate46 2510.3RAB7A, RAB5A, AGFG1, ARSA
6n-ethylmaleimide46 129.5RAB5A, RAB6A, AGFG1
7cysteine468.1SERPINF1, CHM, RAB5A, RAB6A, AGFG1, ARSA
8lipid468.0CHM, RPE65, RAB7A, RAB5A, RAB6A, AGFG1
9gdp467.9AGFG1, CHM, RAB7A, RAB5A, RAB27A, RAB6A
10gtp46 308.9CHM, RAB7A, RAB5A, RAB27A, RAB6A, RAB3A

GO Terms for genes affiliated with Choroideremia

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17Gene Ontology
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Cellular components related to Choroideremia according to GeneCards/GeneDecks:

idNameGO IDScoreTop Affiliating Genes
1lysosomeGO:0057649.7ARSA, RAB27A, RAB7A
2Rab-protein geranylgeranyltransferase complexGO:0059689.4RABGGTA, RABGGTB, CHML, CHM
3melanosomeGO:0424708.5SERPINF1, RAB7A, RAB5A, RAB1A, RAB27A
4extracellular vesicular exosomeGO:0700627.6SERPINF1, RAB7A, RAB5A, RAB1A, RAB27A, RAB6A
5cytosolGO:0058296.8CHM, CHML, RPS6KA6, RAB5A, RAB1A, RAB6A

Biological processes related to Choroideremia according to GeneCards/GeneDecks:

(show all 7)
idNameGO IDScoreTop Affiliating Genes
1positive regulation of exocytosisGO:0459219.6RAB5A, RAB27A
2protein geranylgeranylationGO:0183449.5RABGGTA, RABGGTB, CHML, CHM
3visual perceptionGO:0076019.5RABGGTA, RABGGTB, RPE65, CHM
4antigen processing and presentationGO:0198829.4RAB6A, RAB27A
5endocytosisGO:0068978.8RAB1A, RAB5A, RAB7A
6GTP catabolic processGO:0061847.9RAB7A, RAB5A, RAB1A, RAB6A, RAB3A
7small GTPase mediated signal transductionGO:0072647.6RAB7A, RAB5A, RAB1A, RAB27A, RAB6A, RAB3A

Molecular functions related to Choroideremia according to GeneCards/GeneDecks:

idNameGO IDScoreTop Affiliating Genes
1Rab geranylgeranyltransferase activityGO:0046639.4RABGGTA, RABGGTB, CHML, CHM
2GDP bindingGO:0190039.4RAB27A, RAB5A, RAB7A
3Rab GTPase bindingGO:0171379.1CHM, CHML, RABGGTB, RABGGTA
4GTPase activityGO:0039247.6RAB7A, RAB5A, RAB1A, RAB27A, RAB6A, RAB3A
5GTP bindingGO:0055257.5RAB7A, RAB5A, RAB1A, RAB27A, RAB6A, RAB3A

Products for genes affiliated with Choroideremia

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  • Antibodies
  • Proteins
  • Lysates
  • Antibodies

Sources for Choroideremia

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4CDC
14ExPASy
15FMA
23GTR
24HGMD
25HMDB
26ICD10
27ICD10 via Orphanet
28ICD9CM
30IUPHAR
31KEGG
36MeSH
37MESH via Orphanet
38MGI
41NCIt
42NDF-RT
45NINDS
46Novoseek
48OMIM
49OMIM via Orphanet
53PubMed
54QIAGEN
60SNOMED-CT via Orphanet
63UMLS
64UMLS via Orphanet