Sources: 12Gene Ontology See all sources |
Cellular components related to fibrosis according to GeneDecks: (show all 18)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | extracellular region | GO:005576 | INF | LRG1, KL, REG1A, RETN, RETNLB, KITLG | | 2 | extracellular space | GO:005615 | INF | LRG1, KL, REG3A, REN, KIT, KITLG | | 3 | membrane | GO:016020 | INF | PIK3CG, LRG1, PDE4A, RECK, REN, VHL | | 4 | plasma membrane | GO:005886 | INF | PIK3CG, KL, RECK, SGK1, CNR1, CNR2 | | 5 | extracellular matrix | GO:031012 | 16.6 | VWF, VTN, SERPINE2, SERPINE1, LPL, VCAN | | 6 | basolateral plasma membrane | GO:016323 | 15.9 | BEST1, KCNQ1, UMOD, P2RY1, P2RY2, P2RY4 | | 7 | protein complex | GO:043234 | 14.9 | BRCA1, MYC, BMP2, RAB11A, UTRN, S100A1 | | 8 | Golgi lumen | GO:005796 | 14.3 | VCAN, SDC1, MUC1, MUC2, MUC3A, MUC3B | | 9 | platelet alpha granule lumen | GO:031093 | 14.2 | VWF, SERPINF2, SERPINA1, SERPINE1, VEGFA, VEGFC | | 10 | membrane raft | GO:045121 | INF | SELE, BSG, RAB5A, UMOD, FURIN, JAK2 | | 11 | external side of plasma membrane | GO:009897 | INF | KIT, VWF, SELL, SELP, SEMA7A, VCAM1 | | 12 | integral to plasma membrane | GO:005887 | INF | KL, CNR1, CNR2, SELL, SELP, BPI | | 13 | proteinaceous extracellular matrix | GO:005578 | INF | PI3, VWF, SERPINA1, VEGFA, VCAN, BMP4 | | 14 | apical plasma membrane | GO:016324 | INF | VAMP3, CLCA4, SCNN1A, SCNN1B, SCNN1G, UMOD | | 15 | cytoplasm | GO:005737 | INF | PIAS3, PIK3CG, PIN1, KLF6, RGCC, NCF2 | | 16 | cytosol | GO:005829 | INF | PIK3CA, PIK3CG, NCF1, NCF2, PDE3A, PDE4A | | 17 | perinuclear region of cytoplasm | GO:048471 | INF | PDE4A, GC, SELE, LMNA, LMTK2, MYO6 | | 18 | cell surface | GO:009986 | INF | SFRP4, VEGFA, LPL, VCAM1, BMP2, RARA |
Biological processes related to fibrosis according to GeneDecks: (show top 50)
(show all 59)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | positive regulation of transcription from RNA polymerase II promoter | GO:045944 | INF | KLF6, NCOA3, RELA, SERPINF2, SERPINE1, BRCA1 | | 2 | response to hypoxia | GO:001666 | INF | SFTPB, SERPINA1, VEGFA, VCAM1, BMP2, RAF1 | | 3 | inflammatory response | GO:006954 | INF | PIK3CG, RELA, CNR2, KIT, SELE, SELP | | 4 | positive regulation of angiogenesis | GO:045766 | INF | SERPINE1, VEGFA, UTS2, KDR, CHI3L1, CD34 | | 5 | response to drug | GO:042493 | INF | NCF2, PDE3A, PDE4A, REN, VEGFC, LPL | | 6 | small molecule metabolic process | GO:044281 | INF | PIK3CA, PIK3CG, NCOA3, WASL, GCLC, GC | | 7 | signal transduction | GO:007165 | INF | PDE4A, KIT, KITLG, VEGFC, VDR, RARA | | 8 | virus-host interaction | GO:019048 | INF | RELA, VIM, VDAC1, VCAM1, KDR, BAX | | 9 | positive regulation of cell proliferation | GO:008284 | INF | REG1A, KIT, VIP, VEGFA, VEGFC, MYC | | 10 | cell-cell signaling | GO:007267 | 20.0 | BMP2, BMP3, S100A9, XCL1, CEACAM6, FZD1 | | 11 | innate immune response | GO:045087 | 19.9 | PIK3CG, PIN1, NCF1, NCF2, RELA, SFTPD | | 12 | positive regulation of transcription, DNA-dependent | GO:045893 | 18.8 | KLF6, NCOA3, RELA, BRCA1, VHL, MYC | | 13 | response to lipopolysaccharide | GO:032496 | 17.7 | NCF2, CNR1, CNR2, SFTPB, SFTPC, SELE | | 14 | aging | GO:007568 | 17.2 | KL, NCF2, CNR1, VDR, VCAM1, P2RY1 | | 15 | extracellular matrix organization | GO:030198 | 16.2 | RECK, SERPINH1, BMP1, CMA1, LGALS3, FURIN | | 16 | cytokine-mediated signaling pathway | GO:019221 | 15.8 | PIN1, KLF6, RELA, KIT, VCAM1, LIFR | | 17 | transforming growth factor beta receptor signaling pathway | GO:007179 | 15.3 | SERPINE1, MYC, UBC, MSTN, FURIN, JUN | | 18 | platelet degranulation | GO:002576 | 15.2 | VWF, SELP, SERPINF2, SERPINA1, SERPINE1, VEGFA | | 19 | positive regulation of I-kappaB kinase/NF-kappaB cascade | GO:043123 | 15.0 | RELA, PARK2, LGALS1, LGALS9, CHUK, UBC | | 20 | response to glucocorticoid stimulus | GO:051384 | 14.7 | SFRP4, SFTPB, SFTPC, SERPINE1, BGLAP, BCHE | | 21 | elevation of cytosolic calcium ion concentration | GO:007204 | 14.5 | UTS2, BDKRB1, S1PR3, P2RY1, P2RY2, P2RY4 | | 22 | positive regulation of ERK1 and ERK2 cascade | GO:070374 | 14.5 | SEMA7A, SERPINF2, BMP2, BMP4, KDR, CHI3L1 | | 23 | positive regulation of smooth muscle cell proliferation | GO:048661 | 14.4 | SERPINF2, BMP4, S1PR1, JUN, FLT1, IL13 | | 24 | regulation of blood pressure | GO:008217 | 14.2 | REN, SGK1, UTS2, LEP, CHGA, CD34 | | 25 | response to organic cyclic compound | GO:014070 | 14.0 | NCF2, SELP, SERPINA1, BMP4, UGT1A1, ATF1 | | 26 | response to ethanol | GO:045471 | 13.9 | CNR1, RBP4, BGLAP, BCL2, CHAT, LCT | | 27 | extracellular matrix disassembly | GO:022617 | 13.6 | CMA1, FURIN, MMP1, MMP10, MMP11, MMP13 | | 28 | response to estrogen stimulus | GO:043627 | 13.6 | SERPINE1, BRCA1, BGLAP, BCL2, LCT, MSTN | | 29 | heart development | GO:007507 | 13.6 | PCNA, RBP4, VCAM1, VCAN, BMP2, RAF1 | | 30 | positive regulation of protein kinase B signaling cascade | GO:051897 | 13.6 | PIK3CG, CHI3L1, ARRB2, INS, ILK, ANGPT1 | | 31 | positive regulation of nitric oxide biosynthetic process | GO:045429 | 13.6 | JAK2, INS, IL1B, IFNG, ICAM1, HSP90AA1 | | 32 | wound healing | GO:042060 | 13.4 | KLF6, RAF1, S100A8, P2RY2, INS, FGF10 | | 33 | positive regulation of phosphatidylinositol 3-kinase cascade | GO:014068 | 13.2 | KIT, SELP, KDR, JAK2, FLT1, INS | | 34 | positive regulation of MAP kinase activity | GO:043406 | 13.2 | PIK3CG, KITLG, VEGFA, CD40, FLT1, FGFR1 | | 35 | response to mechanical stimulus | GO:009612 | 12.7 | BMP2, BMP4, BGLAP, CHI3L1, P2RY1, JUN | | 36 | negative regulation of cell proliferation | GO:008285 | INF | RGCC, SFRP4, SERPINE2, VHL, VDR, BMP2 | | 37 | cell surface receptor signaling pathway | GO:007166 | INF | BSG, LIFR, LEPR, P2RY1, MPL, JMJD6 | | 38 | immune response | GO:006955 | INF | CNR2, VTN, SEMA7A, BPI, BMP6, RAG1 | | 39 | positive regulation of MAPK cascade | GO:043410 | INF | KIT, LIF, KDR, LEP, CD36, | | 40 | positive regulation of cell migration | GO:030335 | INF | VEGFA, BMP2, KDR, S1PR1, FURIN, JAK2 | | 41 | apoptotic process | GO:006915 | INF | SGK1, VIM, BRCA1, VDAC1, LMNA, RASSF6 | | 42 | chemotaxis | GO:006935 | INF | S100A8, S100A9, FPR1, FGF2, IL4, ENPP2 | | 43 | positive regulation of protein phosphorylation | GO:001934 | INF | PIN1, VEGFA, BMP2, BMP4, P2RY1, FZD1 | | 44 | anti-apoptosis | GO:006916 | INF | PIK3CA, RELA, GCLC, VHL, BIRC5, BCL2 | | 45 | positive regulation of peptidyl-tyrosine phosphorylation | GO:050731 | INF | KITLG, VTN, VEGFA, LIF, JAK2, CD36 | | 46 | positive regulation of apoptotic process | GO:043065 | INF | CNR1, SFRP4, BMP2, BMP4, CLU, BAX | | 47 | blood coagulation | GO:007596 | INF | PIK3CA, PIK3CG, PDE3A, VWF, SELL, SELP | | 48 | negative regulation of apoptotic process | GO:043066 | INF | PIK3CG, PDE3A, RELA, SERPINE1, VEGFA, MYC | | 49 | angiogenesis | GO:001525 | INF | PIK3CA, PIK3CG, SETD2, SERPINE1, VEGFA, VEGFC | | 50 | platelet activation | GO:030168 | INF | PIK3CA, PIK3CG, VWF, SELP, SERPINF2, SERPINA1 |
Molecular functions related to fibrosis according to GeneDecks: (show all 15)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | protein binding | GO:005515 | INF | PIK3CA, PIAS3, PIK3CG, PIN1, RGCC, NCF1 | | 2 | ATP binding | GO:005524 | INF | PIK3CA, PIK3CG, SGK1, KIT, KIF21A, KIF16B | | 3 | protease binding | GO:002020 | INF | KIT, VWF, SELL, SERPINC1, SERPINF2, SERPINA1 | | 4 | receptor binding | GO:005102 | 19.4 | REN, SERPINE2, SERPINE1, LPL, VCP, BMP2 | | 5 | cytokine activity | GO:005125 | 18.5 | KITLG, VEGFA, BMP1, BMP2, BMP3, BMP4 | | 6 | chemokine activity | GO:008009 | 15.0 | XCL1, IL8, CCL4, CCL7, CCL27, CCL22 | | 7 | hormone activity | GO:005179 | 14.6 | KL, RETN, RETNLB, VIP, UTS2, SCT | | 8 | heme binding | GO:020037 | 14.4 | LPO, MPO, JAK2, FECH, FADS1, FADS2 | | 9 | calcium ion binding | GO:005509 | INF | RCN1, GCA, VCAN, BMP1, UTRN, BGLAP | | 10 | protein heterodimerization activity | GO:046982 | INF | GCA, VEGFA, MYC, BMP2, BMP6, RARA | | 11 | protein homodimerization activity | GO:042803 | INF | KIT, VWF, SFTPC, GCA, SERPINF2, NAGA | | 12 | growth factor activity | GO:008083 | INF | REG1A, KITLG, VEGFA, VEGFC, BMP1, BMP2 | | 13 | integrin binding | GO:005178 | INF | VWF, VTN, SEMA7A, VCAM1, KDR, ITGA1 | | 14 | heparin binding | GO:008201 | INF | VTN, SELL, SELP, SERPINE2, SERPINC1, VEGFA | | 15 | enzyme binding | GO:019899 | INF | PIAS3, BRCA1, VHL, RARA, BIRC5, BCHE |
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