XLG
MCID: GLY040
MIFTS: 30

Glycogen Storage Disease, Type Ixa1 (XLG) malady

Genetic diseases, Liver diseases, Rare diseases categories
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Summaries for Glycogen Storage Disease, Type Ixa1

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47OMIM, 33MalaCards
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MalaCards: Glycogen Storage Disease, Type Ixa1, also known as glycogen storage disease due to liver phosphorylase kinase deficiency, is related to liver cirrhosis and glycogen storage disease. An important gene associated with Glycogen Storage Disease, Type Ixa1 is PHKA2 (phosphorylase kinase, alpha 2 (liver)), and among its related pathways are fMLP Pathway and Translation Insulin regulation of translation. The compounds adp and glycogen have been mentioned in the context of this disorder. Affiliated tissues include liver.

Description from OMIM:47 306000,613027

Aliases & Classifications for Glycogen Storage Disease, Type Ixa1

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Sources:
47OMIM, 49Orphanet, 59SNOMED-CT via Orphanet, 26ICD10 via Orphanet
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Classifications:

Malacards categories (disease lists): (See all malacards categories)
Global: Genetic diseases, Rare diseases
Anatomical: Liver diseases


Characteristics (Orphanet epidemiological data):

49
glycogen storage disease due to liver phosphorylase kinase deficiency:
Inheritance: Autosomal recessive,X-linked recessive; Age of onset: Childhood; Age of death: Normal


Aliases & Descriptions:

glycogen storage disease, type ixa1 47
glycogen storage disease due to liver phosphorylase kinase deficiency 49
glycogenosis due to liver phosphorylase kinase deficiency 49
gsd due to liver phosphorylase kinase deficiency 49
glycogen storage disease type ixc 49
glycogen storage disease type ixa 49
glycogen storage disease type 9c 49
glycogen storage disease type 9a 49
glycogenosis type ixc 49
glycogenosis type ixa 49
glycogenosis type 9a 49
glycogenosis type 9c 49
gsd type ixa 49
gsd type ixc 49
gsd type 9c 49
gsd type 9a 49
xlg 49


External Ids:

SNOMED-CT via Orphanet59 235908005
ICD10 via Orphanet26 E74.0

Related Diseases for Glycogen Storage Disease, Type Ixa1

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17GeneCards, 18GeneDecks
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Diseases related to Glycogen Storage Disease, Type Ixa1 via text searches within MalaCards or GeneCards/GeneDecks gene sharing:

idRelated DiseaseScoreTop Affiliating Genes
1liver cirrhosis10.0PHKG2, PHKA2
2glycogen storage disease9.9PHKG2, PHKA2

Symptoms for Glycogen Storage Disease, Type Ixa1

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47OMIM
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Symptoms by clinical synopsis from OMIM:

306000

Clinical features from OMIM:

306000,613027

Drugs & Therapeutics for Glycogen Storage Disease, Type Ixa1

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Sources:
42NIH Clinical Center, 6ClinicalTrials
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Drug clinical trials:

Search ClinicalTrials for Glycogen Storage Disease, Type Ixa1

Search NIH Clinical Center for Glycogen Storage Disease, Type Ixa1

Genetic Tests for Glycogen Storage Disease, Type Ixa1

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Anatomical Context for Glycogen Storage Disease, Type Ixa1

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33MalaCards
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MalaCards organs/tissues related to Glycogen Storage Disease, Type Ixa1:

33
Liver

Animal Models for Glycogen Storage Disease, Type Ixa1 or affiliated genes

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Publications for Glycogen Storage Disease, Type Ixa1

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Variations for Glycogen Storage Disease, Type Ixa1

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Sources:
64UniProtKB/Swiss-Prot, 1 National Center for Biotechnology Information (Clinvar)
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UniProtKB/Swiss-Prot genetic disease variations for Glycogen Storage Disease, Type Ixa1:

64 (show all 17)
id Symbol AA change Variation ID SNP ID
1PHKA2p.His132ProVAR_006177
2PHKA2p.His132TyrVAR_006178
3PHKA2p.Arg186CysVAR_006180
4PHKA2p.Arg186HisVAR_006181
5PHKA2p.Asp299GlyVAR_006183
6PHKA2p.Thr1114IleVAR_006185
7PHKA2p.Pro1205LeuVAR_006186
8PHKA2p.Lys189GluVAR_012269
9PHKA2p.Gly193ValVAR_012271
10PHKA2p.Arg295HisVAR_012272
11PHKA2p.Pro399SerVAR_012273
12PHKA2p.Glu1125LysVAR_012276
13PHKA2p.Gly1207TrpVAR_012277
14PHKA2p.Pro498LeuVAR_062394
15PHKA2p.Pro869ArgVAR_062395
16PHKA2p.Arg916TrpVAR_062396
17PHKA2p.Met1113IleVAR_062398

Clinvar genetic disease variations for Glycogen Storage Disease, Type Ixa1:

1 (show all 12)
id Gene Name Type Significance SNP ID Assembly Location
1PHKA2NM_000292.2(PHKA2): c.3025C> T (p.Gln1009Ter)single nucleotide variantPathogenicrs137852285GRCh37Chr X, 18919605: 18919605
2PHKA2NM_000292.2(PHKA2): c.2296C> T (p.Gln766Ter)single nucleotide variantPathogenicrs137852286GRCh37Chr X, 18926983: 18926983
3PHKA2NM_000292.2(PHKA2): c.717+1G> Tsingle nucleotide variantPathogenicGRCh37Chr X, 18961827: 18961827
4PHKA2NM_000292.2(PHKA2): c.3146C> A (p.Ser1049Ter)single nucleotide variantPathogenicrs137852287GRCh37Chr X, 18915417: 18915417
5NM_000292.2(PHKA2): c.3614C> T (p.Pro1205Leu)single nucleotide variantPathogenicrs137852288GRCh37Chr X, 18911697: 18911697
6PHKA2NM_000292.2(PHKA2): c.421_423delTTC (p.Phe141del)deletionPathogenicGRCh37Chr X, 18969253: 18969255
7PHKA2NM_000292.2(PHKA2): c.896A> G (p.Asp299Gly)single nucleotide variantPathogenicrs137852289GRCh37Chr X, 18958135: 18958135
8PHKG2NM_000294.2(PHKG2): c.566G> A (p.Gly189Glu)single nucleotide variantPathogenicrs137853588GRCh37Chr 16, 30767512: 30767512
9PHKG2NM_000294.2(PHKG2): c.317T> A (p.Val106Glu)single nucleotide variantPathogenicrs137853589GRCh37Chr 16, 30762915: 30762915
10PHKG2NM_000294.2(PHKG2): c.130C> T (p.Arg44Ter)single nucleotide variantPathogenicrs137853590GRCh37Chr 16, 30762461: 30762461
11PHKG2NM_000294.2(PHKG2): c.433C> T (p.His145Tyr)single nucleotide variantPathogenicrs137853591GRCh37Chr 16, 30764755: 30764755
12PHKG2NM_000294.2(PHKG2): c.677T> G (p.Leu226Arg)single nucleotide variantPathogenicrs137853592GRCh37Chr 16, 30767717: 30767717

Expression for genes affiliated with Glycogen Storage Disease, Type Ixa1

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2BioGPS, 15Gene Expression Omnibus DataSets
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Expression patterns in normal tissues for genes affiliated with Glycogen Storage Disease, Type Ixa1

Search GEO for disease gene expression data for Glycogen Storage Disease, Type Ixa1.

Pathways for genes affiliated with Glycogen Storage Disease, Type Ixa1

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Sources:
50PathCards, 53QIAGEN, 60Thomson Reuters, 38NCBI BioSystems Database, 30KEGG, 55Reactome
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Pathways related to Glycogen Storage Disease, Type Ixa1 according to GeneCards/GeneDecks:

idSuper pathways (with members indented)ScoreTop Affiliating Genes
1
Show member pathways
9.1PHKG2, PHKA2
2
Show member pathways
Transcription Receptor mediated HIF regulation60
Development CNTF receptor signaling60
Class IB PI3K non-lipid kinase events38
ErbB2/ErbB3 signaling events38
Development Growth hormone signaling via PI3K AKT and MAPK cascades60
Translation Regulation activity of EIF260
Regulation of lipid metabolism Insulin signaling generic cascades60
Transcription PPAR Pathway60
Cell adhesion PLAU signaling60
Translation Regulation activity of EIF4F60
9.1PHKG2, PHKA2
3
Show member pathways
9.1PHKG2, PHKA2
4
Show member pathways
9.1PHKA2, PHKG2
59.1PHKG2, PHKA2
6
Show member pathways
malate-aspartate shuttle38
glycogen biosynthesis II (from UDP-D-Glucose)38
9.1PHKG2, PHKA2
7
Show member pathways
Signal transduction cAMP signaling60
9.1PHKG2, PHKA2
89.1PHKG2, PHKA2

Compounds for genes affiliated with Glycogen Storage Disease, Type Ixa1

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45Novoseek, 29IUPHAR, 24HMDB
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Compounds related to Glycogen Storage Disease, Type Ixa1 according to GeneCards/GeneDecks:

idCompoundScoreTop Affiliating Genes
1adp45 29 2411.1PHKG2, PHKA2
2glycogen45 249.8PHKG2, PHKA2

GO Terms for genes affiliated with Glycogen Storage Disease, Type Ixa1

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16Gene Ontology
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Cellular components related to Glycogen Storage Disease, Type Ixa1 according to GeneCards/GeneDecks:

idNameGO IDScoreTop Affiliating Genes
1phosphorylase kinase complexGO:0059649.1PHKG2, PHKA2

Biological processes related to Glycogen Storage Disease, Type Ixa1 according to GeneCards/GeneDecks:

idNameGO IDScoreTop Affiliating Genes
1glycogen catabolic processGO:0059809.2PHKG2, PHKA2
2generation of precursor metabolites and energyGO:0060919.2PHKG2, PHKA2
3glucose metabolic processGO:0060069.1PHKG2, PHKA2
4small molecule metabolic processGO:0442819.1PHKG2, PHKA2
5carbohydrate metabolic processGO:0059759.0PHKA2, PHKG2
6protein phosphorylationGO:0064688.8PHKG2, PHKA2

Molecular functions related to Glycogen Storage Disease, Type Ixa1 according to GeneCards/GeneDecks:

idNameGO IDScoreTop Affiliating Genes
1calmodulin bindingGO:0055169.1PHKG2, PHKA2
2phosphorylase kinase activityGO:0046898.8PHKG2, PHKA2

Products for genes affiliated with Glycogen Storage Disease, Type Ixa1

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  • Antibodies
  • Proteins
  • Lysates
  • Antibodies

Sources for Glycogen Storage Disease, Type Ixa1

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4CDC
13ExPASy
14FMA
22GTR
23HGMD
24HMDB
25ICD10
26ICD10 via Orphanet
27ICD9CM
29IUPHAR
30KEGG
35MeSH
36MESH via Orphanet
37MGI
40NCIt
41NDF-RT
44NINDS
45Novoseek
47OMIM
48OMIM via Orphanet
52PubMed
53QIAGEN
59SNOMED-CT via Orphanet
62UMLS
63UMLS via Orphanet