Sources: 12Gene Ontology See all sources |
Cellular components related to sporadic breast cancer according to GeneDecks: (show all 14)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | Fanconi anaemia nuclear complex | GO:043240 | 10.8 | FANCG, FANCC, FANCF, FANCE, FANCA | | 2 | chromosome, telomeric region | GO:000781 | 10.5 | H2AFX, MRE11A, ATM, CHEK2, CHEK1, RAD17 | | 3 | Mre11 complex | GO:030870 | 10.4 | NBN, RAD50, MRE11A | | 4 | PML body | GO:016605 | 10.2 | PML, PTEN, TP53, ATR, CHEK2, RAD51 | | 5 | transcription factor complex | GO:005667 | 9.8 | EP300, SOX2, PRKDC, HIF1A, SRA1, JUN | | 6 | integral to lumenal side of endoplasmic reticulum membrane | GO:071556 | 9.7 | HLA-DRB1, HLA-DQA1, HLA-C, HLA-B, HLA-A | | 7 | nuclear body | GO:016604 | 9.4 | TP53, MDM2, CDKN2A, MYC, NCOR2 | | 8 | ER to Golgi transport vesicle membrane | GO:012507 | 9.4 | HLA-DRB1, HLA-DQA1, HLA-C, HLA-B, HLA-A | | 9 | protein complex | GO:043234 | 9.3 | PSEN2, STK11, NR3C1, TP53, MDM2, MEF2C | | 10 | nucleolus | GO:005730 | 7.7 | NFKB1, NOS3, NR3C1, TP53, HUS1, CCND2 | | 11 | nucleoplasm | GO:005654 | 6.5 | CDK1, CHEK2, CHEK1, PARP1, LIG4, RAD1 | | 12 | cytoplasm | GO:005737 | 6.3 | CTTN, NR3C1, NOS2, NOS3, PHB, NFKB1 | | 13 | cytosol | GO:005829 | 5.9 | NOS3, NOS2, PLK1, NR3C1, PPARGC1A, CYP19A1 | | 14 | nucleus | GO:005634 | 5.0 | EHMT2, EHF, WEE1, PGR, NMI, PMS1 |
Biological processes related to sporadic breast cancer according to GeneDecks: (show top 50)
(show all 87)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | double-strand break repair via homologous recombination | GO:000724 | 11.0 | RAD51, NBN, BRCA1, MRE11A, BRCA2, ATM | | 2 | DNA damage checkpoint | GO:000077 | 10.9 | HUS1, H2AFX, CHEK1, CHEK2, ATRIP, ATR | | 3 | DNA damage response, signal transduction resulting in induction of apoptosis | GO:008630 | 10.7 | ATM, BRCA1, PML, ABL1, TP73, MSH6 | | 4 | response to ionizing radiation | GO:010212 | 10.6 | BRCA1, ATM, STK11, H2AFX, CYP19A1, CYP17A1 | | 5 | response to UV | GO:009411 | 10.5 | PML, MSH6, CDKN1A, CDKN2D, MAPK8, HUS1 | | 6 | positive regulation of protein autophosphorylation | GO:031954 | 10.5 | NBN, RAP2A, VEGFA, RAD50, MRE11A | | 7 | cellular response to ionizing radiation | GO:071479 | 10.5 | TP53, HUS1, MGMT, CDKN1A, RAD1, GADD45A | | 8 | double-strand break repair | GO:006302 | 10.4 | TP53, MRE11A, ATM, XRCC6, CHEK2, LIG4 | | 9 | replicative senescence | GO:090399 | 10.3 | CDKN2A, CDKN1A, ATM, ATR, CHEK2, CHEK1 | | 10 | DNA damage induced protein phosphorylation | GO:006975 | 10.3 | CHEK1, CHEK2, ATM, ABL1 | | 11 | cell cycle checkpoint | GO:000075 | 10.3 | WEE1, RAD1, RAD17, RBBP8, RB1, CHEK1 | | 12 | DNA repair | GO:006281 | 10.2 | PRKDC, ATRIP, ATM, ATR, MSH6, MSH2 | | 13 | DNA replication | GO:006260 | 10.1 | PCNA, CHEK1, RAD17, FHIT, RAD1, ATR | | 14 | MyD88-independent toll-like receptor signaling pathway | GO:002756 | 10.0 | NFKBIA, NFKB1, RPS6KA1, MAPK9, MAPK8, MEF2C | | 15 | TRIF-dependent toll-like receptor signaling pathway | GO:035666 | 10.0 | NFKB1, NFKBIA, RPS6KA1, MAPK9, ATF1, JUN | | 16 | toll-like receptor 1 signaling pathway | GO:034130 | 10.0 | NFKB1, MAPK9, RPS6KA1, MAPK8, MEF2C, CDK1 | | 17 | toll-like receptor 3 signaling pathway | GO:034138 | 10.0 | ATF1, NFKBIA, JUN, CDK1, MEF2C, MAPK8 | | 18 | peptidyl-serine phosphorylation | GO:018105 | 10.0 | TGFBR2, PRKDC, PLK1, MAPK8, AKT1, TGFBR1 | | 19 | toll-like receptor 2 signaling pathway | GO:034134 | 10.0 | NFKB1, RPS6KA1, ATF1, MAPK8, MEF2C, CDK1 | | 20 | negative regulation of cell growth | GO:030308 | 10.0 | TGFB1, PHB, TP53, ESR2, CDKN2A, CDKN2D | | 21 | toll-like receptor signaling pathway | GO:002224 | 10.0 | MAPK9, RPS6KA1, NFKB1, NFKBIA, MAPK8, MEF2C | | 22 | MyD88-dependent toll-like receptor signaling pathway | GO:002755 | 10.0 | NFKBIA, NFKB1, RPS6KA1, MAPK9, MAPK8, MEF2C | | 23 | response to gamma radiation | GO:010332 | 10.0 | PML, PRKDC, GPX1, CHEK2, LIG4, MYC | | 24 | Toll signaling pathway | GO:008063 | 10.0 | ATF1, NFKB1, CDK1, MEF2C, MAPK8, MAPK9 | | 25 | toll-like receptor 4 signaling pathway | GO:034142 | 9.9 | ATF1, CDK1, NFKB1, NFKBIA, RPS6KA1, MAPK9 | | 26 | mismatch repair | GO:006298 | 9.9 | MSH2, MSH6, TP73, PCNA, ABL1 | | 27 | telomere maintenance | GO:000723 | 9.8 | RAD50, PRKDC, NBN, PARP1, RFC1, PCNA | | 28 | transcription initiation from RNA polymerase II promoter | GO:006367 | 9.7 | PARP1, MYC, VDR, NCOR2, GTF2F1, NR3C1 | | 29 | nerve growth factor receptor signaling pathway | GO:048011 | 9.6 | MDM2, ATF1, MAPK8, AKT1, PTEN, RPS6KA1 | | 30 | interferon-gamma-mediated signaling pathway | GO:060333 | 9.6 | HLA-DQA1, IFNG, HLA-A, HLA-B, HLA-DRB1, HLA-C | | 31 | protein complex assembly | GO:006461 | 9.6 | CDK1, PML, PPARGC1A, FANCC, FANCA, MDM2 | | 32 | release of cytochrome c from mitochondria | GO:001836 | 9.5 | GPX1, SOD2, TP73, TP53, JUN, MYC | | 33 | response to DNA damage stimulus | GO:006974 | 9.4 | STK11, H2AFX, TP73, TP53, HUS1, CCND1 | | 34 | cell proliferation | GO:008283 | 9.4 | MKI67, NBN, PCNA, LIG4, UHRF1, MRE11A | | 35 | response to organic cyclic compound | GO:014070 | 9.4 | CCND2, NOS3, CDKN1A, JUN, CDK1, ATF1 | | 36 | heart development | GO:007507 | 9.3 | PCNA, ATM, EP300, PRKDC, TGFBR2, TGFBR1 | | 37 | negative regulation of cell proliferation | GO:008285 | 9.2 | KAT2B, STK11, TGFB1, PHB, COL18A1, NOS3 | | 38 | virus-host interaction | GO:019048 | 9.2 | EP300, TBP, TP53, HLA-C, HLA-B, HLA-A | | 39 | positive regulation of gene expression | GO:010628 | 9.2 | DNMT1, VDR, TGFB1, CDK1, MAPK9, MED1 | | 40 | organ regeneration | GO:031100 | 9.2 | CDKN1A, CDK1, MKI67, MED1, CXCL12, CCND1 | | 41 | response to hypoxia | GO:001666 | 9.0 | CXCL12, XRCC1, PML, ATM, VEGFA, ERCC2 | | 42 | apoptotic process | GO:006915 | 8.9 | TGFBR1, TGFBR2, PRKDC, EP300, GADD45A, NBN | | 43 | cell cycle arrest | GO:007050 | 8.9 | MSH2, BARD1, RASSF1, MYC, NBN, RB1 | | 44 | transforming growth factor beta receptor signaling pathway | GO:007179 | 8.9 | PML, TGFBR2, TGFBR1, PARP1, TP53, CCNC | | 45 | positive regulation of protein phosphorylation | GO:001934 | 8.8 | CD40, VEGFA, CCND2, CCND1, AKT1, ERBB2 | | 46 | negative regulation of apoptotic process | GO:043066 | 8.7 | IGF1R, AKT1, ERCC2, TP53, PTEN, PLK1 | | 47 | positive regulation of transcription, DNA-dependent | GO:045893 | 8.5 | BRCA1, JUN, CDKN2A, CDH1, GTF2F1, ING1 | | 48 | negative regulation of transcription from RNA polymerase II promoter | GO:000122 | 8.2 | EP300, NCOR2, VDR, IFNG, MYC, PARP1 | | 49 | response to drug | GO:042493 | 7.6 | MSH2, JUN, CDKN1A, NBN, MYC, BCHE | | 50 | positive regulation of transcription from RNA polymerase II promoter | GO:045944 | 7.4 | HDAC2, SOX2, PROX1, PRKDC, STAT1, TGFB1 |
Molecular functions related to sporadic breast cancer according to GeneDecks: (show all 27)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | damaged DNA binding | GO:003684 | 10.9 | H2AFX, ERCC3, FANCG, APEX1, XRCC1, RAD1 | | 2 | ATP-dependent DNA helicase activity | GO:004003 | 10.7 | ERCC3, ERCC2, MRE11A, XRCC6, RAD50, BRIP1 | | 3 | glutathione transferase activity | GO:004364 | 10.6 | GSTZ1, GSTT1, GSTP1, GSTM3, GSTM1 | | 4 | single-stranded DNA specific endodeoxyribonuclease activity | GO:000014 | 10.4 | RAD50, MRE11A | | 5 | mismatched DNA binding | GO:030983 | 10.4 | PMS1, MLH1, MSH6, MSH2 | | 6 | androgen receptor binding | GO:050681 | 10.4 | EP300, NRIP1, PPARGC1A, GRIP1, BRCA1, RB1 | | 7 | transcription coactivator activity | GO:003713 | 10.3 | CARM1, ESR2, SRA1, PPARGC1A, NRIP1, PML | | 8 | cyclin-dependent protein kinase inhibitor activity | GO:004861 | 10.2 | CDKN2A, CDKN2D, CDKN1A, KAT2B | | 9 | histone deacetylase binding | GO:042826 | 10.2 | HIF1A, PHB, NRIP1, MAPK8, MEF2C, KAT2B | | 10 | MutLalpha complex binding | GO:032405 | 10.2 | ATR, MSH6, MSH2, PCNA | | 11 | 3-5 exonuclease activity | GO:008408 | 10.2 | RAD50, RAD1, MRE11A, APEX1 | | 12 | protein C-terminus binding | GO:008022 | 9.9 | ABL1, ERBB2, ERCC3, ERCC2, GRIP1, MKI67 | | 13 | transcription regulatory region DNA binding | GO:044212 | 9.8 | PHB, NFKB1, HIF1A, PROX1, SOX2, TBP | | 14 | protein N-terminus binding | GO:047485 | 9.8 | TGFB1, TP53, ERCC3, ERCC2, ATM, YWHAQ | | 15 | protein serine/threonine kinase activity | GO:004674 | 9.7 | WEE1, PRKDC, STK11, TGFBR1, RPS6KA1, PLK1 | | 16 | protein kinase activity | GO:004672 | 9.5 | PRKDC, TGFBR1, PLK1, ERCC3, ERCC2, AKT1 | | 17 | protein kinase binding | GO:019901 | 9.5 | CCND1, TP53, TP73, PTEN, PLK1, HIF1A | | 18 | double-stranded DNA binding | GO:003690 | 9.3 | JUN, NR3C1, NFKB1, STAT1, MRE11A, MSH6 | | 19 | identical protein binding | GO:042802 | 9.0 | AKT1, ESR1, ERBB2, TP53, TP73, NFKBIA | | 20 | transcription factor binding | GO:008134 | 8.8 | JUN, CDKN2A, GTF2A1, GTF2F1, MED1, MAPK9 | | 21 | protein homodimerization activity | GO:042803 | 8.8 | NR3C1, NOS2, NFKB1, SHBG, ACHE, TGFB1 | | 22 | DNA binding | GO:003677 | 8.4 | PPARGC1A, SRA1, TP53, ERCC3, ERCC2, ESR2 | | 23 | ATP binding | GO:005524 | 8.4 | TP53, ERBB2, ERCC3, ERCC2, AKT1, IGF1R | | 24 | sequence-specific DNA binding transcription factor activity | GO:003700 | 8.4 | TP73, TBP, NR3C1, NFKB1, HIF1A, STAT1 | | 25 | enzyme binding | GO:019899 | 8.3 | PTEN, NFKBIA, H2AFX, HIF1A, TGFB1, STAT1 | | 26 | protein heterodimerization activity | GO:046982 | 8.3 | PML, TGFB1, HIF1A, NR3C1, TP53, ERBB2 | | 27 | protein binding | GO:005515 | 3.5 | ESR1, COL18A1, PHB, NFKB1, NFKBIA, SHARPIN |
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