Sources: 12Gene Ontology See all sources |
Cellular components related to synovitis according to GeneDecks:| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | proteinaceous extracellular matrix | GO:005578 | 10.0 | FGF1, MATN1, TNFRSF11B, COMP, ACAN, TGFB1 | | 2 | cell surface | GO:009986 | 9.8 | TNFRSF1A, ELANE, TLR2, TIMP2, TGFB1, PVR | | 3 | platelet alpha granule lumen | GO:031093 | 9.6 | TGFB1, THBS1, TIMP1, PF4, VEGFA, SERPINA1 | | 4 | integral to plasma membrane | GO:005887 | 9.1 | TNFSF10, TNFRSF1A, TNF, HLA-DRB1, TNFSF11, PDGFRB | | 5 | external side of plasma membrane | GO:009897 | 8.7 | ICAM1, HLA-DRB1, TNF, TLR2, THBS1, CXCL12 | | 6 | plasma membrane | GO:005886 | 7.3 | TNFRSF1B, TNFRSF1A, TNF, HLA-DRB1, HLA-B, AKT1 | | 7 | extracellular region | GO:005576 | 7.0 | FGF2, IL15, IL18, IL1A, IL1B, IL1R1 | | 8 | extracellular space | GO:005615 | 6.5 | ADIPOQ, SELE, IL15, IL16, IL17A, IL18 |
Biological processes related to synovitis according to GeneDecks: (show top 50)
(show all 85)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | collagen catabolic process | GO:030574 | 10.9 | MMP13, MMP11, MMP2, MMP1, MMP3, MMP8 | | 2 | extracellular matrix disassembly | GO:022617 | 10.8 | MMP1, MMP11, MMP13, MMP2, MMP3, MMP8 | | 3 | extracellular matrix organization | GO:030198 | 10.6 | PRSS2, TIMP2, TNFRSF11B, TNF, IBSP, COL2A1 | | 4 | leukocyte cell-cell adhesion | GO:007159 | 10.5 | VCAM1, CD40LG, SELE, ITGB1, ICAM1, ITGB2 | | 5 | chronic inflammatory response | GO:002544 | 10.5 | THBS1, CXCL13, CCL5, S100A9, S100A8, VCAM1 | | 6 | defense response to Gram-positive bacterium | GO:050830 | 10.5 | ACP5, IL6, TNF, PLA2G2A, LTA, TLR2 | | 7 | positive regulation of I-kappaB kinase/NF-kappaB cascade | GO:043123 | 10.4 | TNF, CASP1, ADIPOQ, TNFRSF1A, TNFSF11, TICAM1 | | 8 | proteolysis | GO:006508 | 10.4 | MMP11, ELANE, PRSS2, CASP1, CASP4, CASP3 | | 9 | cellular response to mechanical stimulus | GO:071260 | 10.3 | TNFRSF8, CASP1, TNFRSF1A, FAS, IL18, ITGB1 | | 10 | positive regulation of NF-kappaB transcription factor activity | GO:051092 | 10.3 | ICAM1, TGFB1, TIRAP, TICAM1, TLR2, TNFSF11 | | 11 | lipopolysaccharide-mediated signaling pathway | GO:031663 | 10.1 | TICAM1, TLR2, IL18, IL1B, CCL2, CCL5 | | 12 | positive regulation of inflammatory response | GO:050729 | 10.1 | IL15, CD47, IL18, TNFRSF1A, PLA2G2A, TLR2 | | 13 | lymph node development | GO:048535 | 10.1 | CXCL13, IL15, LTB, TGFB1, LTA | | 14 | cytokine-mediated signaling pathway | GO:019221 | 10.1 | CCL2, ICAM1, HLA-B, HLA-DRB1, TNFRSF1A, TNFSF11 | | 15 | positive regulation of angiogenesis | GO:045766 | 10.1 | MMP9, FGF1, IL1A, IL1B, AQP1, CCL5 | | 16 | positive regulation of fever generation | GO:031622 | 10.0 | TNF, CCL5, PTGS2, IL1B, PLA2G4A | | 17 | positive regulation of nitric oxide biosynthetic process | GO:045429 | 10.0 | IL1B, ICAM1, AKT1, TNF, TICAM1, TLR2 | | 18 | cell-cell signaling | GO:007267 | 9.8 | IL2, IL1B, IL18, IL17A, IL15, ITGB2 | | 19 | response to vitamin D | GO:033280 | 9.7 | IL1B, PTGS2, SPP1, PLA2G4A, TGFB1, BGLAP | | 20 | positive regulation of cell migration | GO:030335 | 9.7 | CCL5, PDGFRB, THBS1, CSF1R, CSF1, PTK2 | | 21 | positive regulation of protein phosphorylation | GO:001934 | 9.6 | TGFB1, IL1B, CSF1R, ADIPOQ, PTK2, TNF | | 22 | humoral immune response | GO:006959 | 9.6 | BCL2, IL6, SH2D1A, LTA, IL7, CCL2 | | 23 | induction of apoptosis | GO:006917 | 9.5 | LTA, TLR2, STAT1, THBS1, TNFSF10, TNF | | 24 | cellular response to organic cyclic compound | GO:071407 | 9.5 | IL1B, IL18, TGFB1, CCL2, CCL5, TNF | | 25 | positive regulation of smooth muscle cell proliferation | GO:048661 | 9.4 | STAT1, ELANE, PDGFRB, JUN, PTGS2, IL6 | | 26 | positive regulation of neuron apoptotic process | GO:043525 | 9.4 | CASP3, TNF, IL18, JUN, ATM, CASP9 | | 27 | cell adhesion | GO:007155 | 9.4 | ACAN, FPR2, BGLAP, CD4, CD47, CCL4 | | 28 | response to glucocorticoid stimulus | GO:051384 | 9.3 | IL1RN, HMGB1, PLA2G4A, FAS, BGLAP, IL1B | | 29 | innate immune response | GO:045087 | 9.2 | IL34, CD4, IL1R1, BCL2, CD55, CSF1R | | 30 | response to lipopolysaccharide | GO:032496 | 9.2 | TIRAP, ELANE, MMP9, IL1A, FAS, CASP1 | | 31 | aging | GO:007568 | 9.2 | PTGS1, JUN, TGFB1, TIMP1, PLA2G4A, CASP7 | | 32 | cellular response to organic substance | GO:071310 | 9.1 | TIMP2, CASP1, CASP3, IL1B, CD68, BCL2 | | 33 | platelet activation | GO:030168 | 9.1 | SERPINA1, VEGFA, CD40LG, IL6, HSPA5, AKT1 | | 34 | blood coagulation | GO:007596 | 9.1 | KNG1, F7, F9, MMP1, THBS1, VEGFA | | 35 | response to radiation | GO:009314 | 9.0 | JUN, CXCL12, BCL2, TGFB1, IL18, TNFSF11 | | 36 | chemotaxis | GO:006935 | 9.0 | CXCL9, CXCL12, CX3CR1, CCL5, CCL2, CCL4 | | 37 | positive regulation of apoptotic process | GO:043065 | 8.9 | PTGS2, TNFSF10, TNFRSF8, TNF, FAS, CTNNB1 | | 38 | inflammatory response | GO:006954 | 8.9 | CRP, IL6, IL34, IL1B, IL1A, IL18 | | 39 | response to ethanol | GO:045471 | 8.8 | BCL2, S100A8, BGLAP, ADIPOQ, TNFRSF1A, ICAM1 | | 40 | immune response | GO:006955 | 8.6 | CXCL9, CXCL13, CXCL12, PRG4, THBS1, TLR2 | | 41 | positive regulation of cell proliferation | GO:008284 | 8.6 | PTHLH, MDM2, PTK2, PLA2G4A, PDGFRB, TIMP1 | | 42 | positive regulation of B cell proliferation | GO:030890 | 8.4 | TICAM1, BCL2, TIRAP, IL4, IL2, CD40LG | | 43 | signal transduction | GO:007165 | 8.4 | CXCL9, CSF1R, CD4, ATM, TLR2, FGF1 | | 44 | response to hypoxia | GO:001666 | 8.1 | CASP1, TNF, TNFRSF1A, LTA, THBS1, TGFB1 | | 45 | anti-apoptosis | GO:006916 | 8.1 | BCL2, AKT1, IL1A, CD40LG, MPO, FAS | | 46 | apoptotic process | GO:006915 | 8.0 | GADD45B, CASP9, AKT1, HMGB1, TNF, TNFRSF11B | | 47 | response to cytokine stimulus | GO:034097 | 8.0 | JUN, SERPINA1, BCL2, ACP5, STAT1, TIMP1 | | 48 | negative regulation of apoptotic process | GO:043066 | 7.3 | PTK2, TNF, CASP3, HSPA5, MAPK7, MAPK8 | | 49 | positive regulation of transcription from RNA polymerase II promoter | GO:045944 | 7.2 | IL6, MAPK7, AKT1, TNFSF11, STAT1, HMGB1 | | 50 | response to drug | GO:042493 | 6.8 | MYC, BGLAP, BCL2, B2M, JUN, ITGB1 |
Molecular functions related to synovitis according to GeneDecks: (show all 9)
| id | Name | GO ID | Score | Top Affiliating Genes | | 1 | tumor necrosis factor receptor binding | GO:005164 | 10.1 | STAT1, LTB, LTA, TNFSF11, TNFSF10, TNF | | 2 | calcium ion binding | GO:005509 | 10.0 | F7, HSPA5, PLA2G4A, PLA2G2A, COMP, THBS1 | | 3 | transmembrane signaling receptor activity | GO:004888 | 10.0 | TLR2, TNFRSF8, ICAM1, ANTXR1, IL1R1, CD4 | | 4 | chemokine activity | GO:008009 | 9.8 | CXCL9, CXCL13, CXCL12, PF4, CCL5, CCL21 | | 5 | protease binding | GO:002020 | 9.4 | ELANE, TNFRSF1A, TNF, IL1R1, ITGB1, BCL2 | | 6 | heparin binding | GO:008201 | 8.9 | PF4, ELANE, THBS1, CXCL13, KNG1, COMP | | 7 | growth factor activity | GO:008083 | 8.3 | IL7, GPI, TGFB1, CXCL12, CSF1, IL6 | | 8 | cytokine activity | GO:005125 | 8.2 | ADIPOQ, GPI, HMGB1, TNF, TNFRSF11B, TNFSF10 | | 9 | protein binding | GO:005515 | 3.5 | HMGB1, TNF, TNFRSF1A, TNFRSF1B, TNFSF10, PTK2 |
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