MCID: USH008
MIFTS: 39

Usher Syndrome, Type 1d malady

Categories: Genetic diseases, Rare diseases, Eye diseases, Ear diseases, Fetal diseases

Aliases & Classifications for Usher Syndrome, Type 1d

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Aliases & Descriptions for Usher Syndrome, Type 1d:

Name: Usher Syndrome, Type 1d 49 11 45
Ush1d 45 22 67
Usher's Syndrome Type 1d 67 24
Usher's Syndrome Type 1h 67 24
Usher Syndrome, Type 1d/f Digenic 49
Usher Syndrome, Type Id 65
Usher Syndrome Type Ih 67
 
Usher Syndrome Type Id 67
Usher Syndrome Type 1d 22
Usher Syndrome 1d/f 67
Usher Syndrome 1h 67
Usher Syndrome 1d 67
Ush1d/f 67
Ush1df 67

Characteristics:

HPO:

61
usher syndrome, type 1d:
Inheritance: autosomal recessive inheritance


Classifications:



External Ids:

OMIM49 601067
MeSH36 D052245
UMLS65 C1832845

Summaries for Usher Syndrome, Type 1d

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OMIM:49 Usher syndrome type I is an autosomal recessive condition characterized by profound congenital hearing impairment with... (601067) more...

MalaCards based summary: Usher Syndrome, Type 1d, also known as ush1d, is related to usher syndrome type 1h and usher syndrome, type 1b, and has symptoms including vestibular dysfunction, rod-cone dystrophy and hearing impairment. An important gene associated with Usher Syndrome, Type 1d is CDH23 (Cadherin-Related 23). Affiliated tissues include breast and eye, and related mouse phenotypes are vision/eye and hearing/vestibular/ear.

NIH Rare Diseases:45 Usher syndrome is a genetic condition characterized by hearing loss or deafness, and progressive vision loss due to retinitis pigmentosa. three major types of usher syndrome have been described - types i, ii, and iii.  the different types are distinguished by their severity and the age when signs and symptoms appear. all three types are inherited in an autosomal recessive manner, which means both copies of the disease-causing gene in each cell have mutations. last updated: 3/3/2014

UniProtKB/Swiss-Prot:67 Usher syndrome 1D: USH is a genetically heterogeneous condition characterized by the association of retinitis pigmentosa with sensorineural deafness. Age at onset and differences in auditory and vestibular function distinguish Usher syndrome type 1 (USH1), Usher syndrome type 2 (USH2) and Usher syndrome type 3 (USH3). USH1 is characterized by profound congenital sensorineural deafness, absent vestibular function and prepubertal onset of progressive retinitis pigmentosa leading to blindness. Usher syndrome 1D/F: USH1DF patients are heterozygous for mutations in CDH23 and PCDH15, indicating a digenic inheritance pattern.

Related Diseases for Usher Syndrome, Type 1d

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Diseases in the Usher Syndrome family:

Usher Syndrome, Type 2a Usher Syndrome, Type 3a
Usher Syndrome, Type 2c Usher Syndrome Type 3b
Usher Syndrome, Type 2d Usher Syndrome, Type Ik
usher syndrome, type 1d Usher Syndrome, Type 1f
Usher Syndrome, Type 1c Usher Syndrome, Type 1b
Usher Syndrome, Type Ij Usher Syndrome, Type 1g
Usher Syndrome Type Ii Usher Syndrome, Type 2b
Usher Syndrome Type 1h Usher Syndrome Type 1j
Usher Syndrome Type 1k

Diseases related to Usher Syndrome, Type 1d via text searches within MalaCards or GeneCards Suite gene sharing:

(show all 27)
idRelated DiseaseScoreTop Affiliating Genes
1usher syndrome type 1h11.6
2usher syndrome, type 1b10.4
3hepatitis10.3
4paroxysmal nocturnal hemoglobinuria10.3
5endocardial fibroelastosis10.3
6hepatic encephalopathy10.3
7food allergy10.3
8cerebritis10.3
9hemoglobinuria10.3
10encephalopathy10.3
11periodontitis10.3
12hemochromatosis10.3
13hemangioma10.3
14angiosarcoma10.3
15hemangioendothelioma10.3
16epithelioid hemangioendothelioma10.3
17deafness, autosomal recessive 239.7PCDH15, USH1C
18autosomal dominant nonsyndromic deafness9.6CDH23, PCDH15
19pulmonary tuberculosis9.6CDH23, USH1C
20deafness, autosomal recessive 129.5CDH23, PCDH15, USH1C
21deafness, autosomal recessive 29.4CDH23, PCDH15, USH1C
22amelogenesis imperfecta, type ig9.4CDH23, PCDH15, USH1C
23pyeloureteritis cystica9.4CDH23, PCDH15, USH1C
24self-healing papular mucinosis9.4CDH23, PCDH15, USH1C
25familial partial lipodystrophy9.4CDH23, PCDH15, USH1C
26intermittent squint9.3CDH23, PCDH15, USH1C
27sacrococcygeal teratoma9.3CDH23, PCDH15, USH1C

Graphical network of the top 20 diseases related to Usher Syndrome, Type 1d:



Diseases related to usher syndrome, type 1d

Symptoms for Usher Syndrome, Type 1d

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Symptoms by clinical synopsis from OMIM:

601067

Clinical features from OMIM:

601067

HPO human phenotypes related to Usher Syndrome, Type 1d:

id Description Frequency HPO Source Accession
1 vestibular dysfunction HP:0001751
2 rod-cone dystrophy HP:0000510
3 hearing impairment HP:0000365

Drugs & Therapeutics for Usher Syndrome, Type 1d

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Interventional clinical trials:

Search ClinicalTrials, NIH Clinical Center for Usher Syndrome, Type 1d

Genetic Tests for Usher Syndrome, Type 1d

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Genetic tests related to Usher Syndrome, Type 1d:

id Genetic test Affiliating Genes
1 Usher Syndrome Type 1d22 CDH23

Anatomical Context for Usher Syndrome, Type 1d

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MalaCards organs/tissues related to Usher Syndrome, Type 1d:

33
Breast, Eye

Animal Models for Usher Syndrome, Type 1d or affiliated genes

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MGI Mouse Phenotypes related to Usher Syndrome, Type 1d:

38
idDescriptionMGI Source AccessionScoreTop Affiliating Genes
1MP:00053918.5CDH23, PCDH15, USH1C
2MP:00053778.5CDH23, PCDH15, USH1C

Publications for Usher Syndrome, Type 1d

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Articles related to Usher Syndrome, Type 1d:

idTitleAuthorsYear
1
Comorbidity in patients with branch retinal vein occlusion: case-control study. (23204001)
2012
2
Concomitant inactivation of p53 and Chk2 in breast cancer. (11857075)
2002
3
D-penicillamine-induced crescentic glomerulonephritis and antimyeloperoxidase antibodies in a patient with scleroderma. Case report and review of the literature. (9426850)
1997
4
Familial pseudohypoaldosteronism. (7704701)
1994
5
Effect of pyridoxine deficiency in mice on their radiosensitivity. (5295345)
1965

Variations for Usher Syndrome, Type 1d

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UniProtKB/Swiss-Prot genetic disease variations for Usher Syndrome, Type 1d:

67 (show all 26)
id Symbol AA change Variation ID SNP ID
1CDH23p.Gln1496HisVAR_012174
2CDH23p.Arg1746GlnVAR_012178
3CDH23p.Ala366ThrVAR_024030rs143282422
4CDH23p.Thr1209AlaVAR_024031rs41281314
5CDH23p.Arg1507GlnVAR_024032
6CDH23p.Arg3189TrpVAR_024033
7CDH23p.Ser3245PheVAR_024034
8CDH23p.Glu247LysVAR_027318
9CDH23p.Ala484ProVAR_027321
10CDH23p.Pro1206ArgVAR_027325
11CDH23p.Gly2017SerVAR_027334
12CDH23p.Ser2517GlyVAR_027340
13CDH23p.Gly2744SerVAR_027342
14CDH23p.Arg2833GlyVAR_027343
15CDH23p.Arg3175HisVAR_027347
16CDH23p.His755TyrVAR_046407
17CDH23p.Val1090IleVAR_046410
18CDH23p.Asn1098SerVAR_046411rs41281310
19CDH23p.Pro1788LeuVAR_046419
20CDH23p.Arg1912TrpVAR_046423
21CDH23p.Asp1930AsnVAR_046424
22CDH23p.Asp2376ValVAR_046429
23CDH23p.Thr2530IleVAR_046432
24CDH23p.Gly2771SerVAR_046434
25CDH23p.Val2968AlaVAR_046437
26PCDH15p.Asp178GlyVAR_069297

Clinvar genetic disease variations for Usher Syndrome, Type 1d:

5 (show all 39)
id Gene Variation Type Significance SNP ID Assembly Location
1CDH23NM_022124.5(CDH23): c.945+1G> Tsingle nucleotide variantPathogenicrs727502919GRCh37Chr 10, 73375374: 73375374
2CDH23NM_022124.5(CDH23): c.7873-2A> Tsingle nucleotide variantPathogenicrs727502933GRCh37Chr 10, 73565561: 73565561
3NM_022124.5(CDH23): c.4209+1G> Tsingle nucleotide variantPathogenicrs727503841GRCh37Chr 10, 73494416: 73494416
4CDH23NM_022124.5(CDH23): c.1369C> T (p.Arg457Trp)single nucleotide variantLikely pathogenicrs727504455GRCh37Chr 10, 73406294: 73406294
5CDH23NM_022124.5(CDH23): c.7979_7986delACTGGGAG (p.Asp2660Valfs)deletionPathogenicrs727504761GRCh37Chr 10, 73565669: 73565676
6NC_000010.11: g.(?_71731987)_(71734281_?)deldeletionPathogenicGRCh37Chr 10, 73491744: 73494038
7NM_022124.5(CDH23): c.146-2A> Gsingle nucleotide variantPathogenicrs794727649GRCh37Chr 10, 73269837: 73269837
8PCDH15NM_001142763.1(PCDH15): c.2986C> T (p.Arg996Ter)single nucleotide variantPathogenicrs754391973GRCh37Chr 10, 55721550: 55721550
9PCDH15NM_001142763.1: c.-189197_c.610-5166deldeletionLikely pathogenic
10CDH23NM_022124.5(CDH23): c.1246_1266del21 (p.Ala416_Glu422del)deletionLikely pathogenicrs397517305GRCh37Chr 10, 73405693: 73405713
11CDH23NM_022124.5(CDH23): c.2012delT (p.Phe671Serfs)deletionPathogenicrs397517313GRCh37Chr 10, 73447429: 73447429
12NM_022124.5(CDH23): c.3481C> T (p.Arg1161Ter)single nucleotide variantPathogenicrs397517323GRCh37Chr 10, 73485179: 73485179
13NM_022124.5(CDH23): c.3628C> T (p.Gln1210Ter)single nucleotide variantPathogenicrs397517326GRCh37Chr 10, 73490274: 73490274
14NM_022124.5(CDH23): c.3706C> T (p.Arg1236Ter)single nucleotide variantPathogenicrs397517327GRCh37Chr 10, 73490352: 73490352
15CDH23NM_022124.5(CDH23): c.4309C> T (p.Arg1437Ter)single nucleotide variantPathogenicrs397517329GRCh37Chr 10, 73498354: 73498354
16CDH23NM_022124.5(CDH23): c.46delG (p.Val16Cysfs)deletionPathogenicrs397517331GRCh37Chr 10, 73199634: 73199634
17CDH23NM_022124.5(CDH23): c.5272C> T (p.Gln1758Ter)single nucleotide variantPathogenicrs397517337GRCh37Chr 10, 73539108: 73539108
18CDH23NM_022124.5(CDH23): c.5712+1G> Asingle nucleotide variantPathogenicrs397517341GRCh37Chr 10, 73544858: 73544858
19CDH23NM_022124.5(CDH23): c.5712G> A (p.Thr1904=)single nucleotide variantPathogenicrs397517342GRCh37Chr 10, 73544857: 73544857
20CDH23NM_022124.5(CDH23): c.5923+1G> Asingle nucleotide variantPathogenicrs397517346GRCh37Chr 10, 73548800: 73548800
21CDH23NM_022124.5(CDH23): c.6049+1G> Asingle nucleotide variantPathogenicrs111033247GRCh37Chr 10, 73550171: 73550171
22CDH23NM_022124.5(CDH23): c.6049G> A (p.Gly2017Ser)single nucleotide variantLikely pathogenicrs183431253GRCh37Chr 10, 73550170: 73550170
23CDH23NM_022124.5(CDH23): c.6050-9G> Asingle nucleotide variantPathogenicrs367928692GRCh37Chr 10, 73550880: 73550880
24CDH23NM_022124.5(CDH23): c.6412delG (p.Glu2138Serfs)deletionLikely pathogenicrs111033473GRCh37Chr 10, 73553097: 73553097
25CDH23NM_022124.5(CDH23): c.6968delC (p.Pro2323Leufs)deletionPathogenicrs397517350GRCh37Chr 10, 73558249: 73558249
26CDH23NM_022124.5(CDH23): c.7362G> A (p.Thr2454=)single nucleotide variantLikely pathogenicrs370983472GRCh37Chr 10, 73559386: 73559386
27CDH23NM_022124.5(CDH23): c.7776G> A (p.Trp2592Ter)single nucleotide variantPathogenicrs397517353GRCh37Chr 10, 73563081: 73563081
28CDH23NM_022124.5(CDH23): c.7823G> A (p.Arg2608His)single nucleotide variantLikely pathogenicrs202052174GRCh37Chr 10, 73563128: 73563128
29CDH23NM_022124.5(CDH23): c.7921G> C (p.Asp2641His)single nucleotide variantLikely pathogenicrs397517354GRCh37Chr 10, 73565611: 73565611
30CDH23NM_022124.5(CDH23): c.8781C> A (p.Tyr2927Ter)single nucleotide variantPathogenicrs397517362GRCh37Chr 10, 73569635: 73569635
31CDH23NM_022124.5(CDH23): c.9629_9632delTCAA (p.Ile3210Argfs)deletionPathogenicrs397517367GRCh37Chr 10, 73572643: 73572646
32CDH23NM_022124.5(CDH23): c.4488G> C (p.Gln1496His)single nucleotide variantPathogenicrs121908347GRCh37Chr 10, 73499529: 73499529
33CDH23NM_022124.5(CDH23): c.5237G> A (p.Arg1746Gln)single nucleotide variantPathogenicrs111033270GRCh37Chr 10, 73539073: 73539073
34NM_022124.5(CDH23): c.3842_3844delTGA (p.Met1281del)deletionPathogenicrs796051860GRCh37Chr 10, 73491870: 73491872
35CDH23NM_022124.5(CDH23): c.7362+5G> Asingle nucleotide variantPathogenicrs727502931GRCh37Chr 10, 73559391: 73559391
36NM_022124.5(CDH23): c.3880C> T (p.Gln1294Ter)single nucleotide variantPathogenicrs121908350GRCh37Chr 10, 73491908: 73491908
37CDH23NM_022124.5(CDH23): c.6442G> A (p.Asp2148Asn)single nucleotide variantPathogenicrs111033271GRCh37Chr 10, 73553127: 73553127
38NM_022124.5(CDH23): c.193delC (p.Leu65Trpfs)deletionPathogenicrs796051861GRCh38Chr 10, 71510129: 71510129
39PCDH15PCDH15, 3-BP DEL, 5601AACdeletionPathogenic

Expression for genes affiliated with Usher Syndrome, Type 1d

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Search GEO for disease gene expression data for Usher Syndrome, Type 1d.

Pathways for genes affiliated with Usher Syndrome, Type 1d

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GO Terms for genes affiliated with Usher Syndrome, Type 1d

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Biological processes related to Usher Syndrome, Type 1d according to GeneCards Suite gene sharing:

idNameGO IDScoreTop Affiliating Genes
1photoreceptor cell maintenanceGO:00454949.0CDH23, PCDH15
2sensory perception of light stimulusGO:00509538.5CDH23, PCDH15, USH1C

Sources for Usher Syndrome, Type 1d

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2CDC
14ExPASy
15FDA
16FMA
24GTR
25HGMD
26HMDB
27ICD10
28ICD10 via Orphanet
29ICD9CM
30IUPHAR
31KEGG
34MedGen
36MeSH
37MESH via Orphanet
38MGI
41NCI
42NCIt
43NDF-RT
46NINDS
47Novoseek
49OMIM
50OMIM via Orphanet
54PubMed
55QIAGEN
60SNOMED-CT via Orphanet
64Tumor Gene Family of Databases
65UMLS
66UMLS via Orphanet