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ALPS2A
MCID: ATM097
MIFTS: 42

Autoimmune Lymphoproliferative Syndrome, Type Iia (ALPS2A)

Categories: Blood diseases, Gastrointestinal diseases, Genetic diseases, Immune diseases, Rare diseases
Genes Variations Tissues Related diseases Publications Pathways Symptoms & Phenotypes
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Aliases & Classifications for Autoimmune Lymphoproliferative Syndrome, Type Iia

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MalaCards integrated aliases for Autoimmune Lymphoproliferative Syndrome, Type Iia:

Name: Autoimmune Lymphoproliferative Syndrome, Type Iia 56 71
Autoimmune Lymphoproliferative Syndrome, Type Ii 56 73 13 54
Alps2a 56 12 73
Autoimmune Lymphoproliferative Syndrome Type Iia 12 73
Autoimmune Lymphoproliferative Syndrome, Type 2a 29 6
Autoimmune Lymphoproliferative Syndrome Type 2a 12 15
Alps2 56 73
Autoimmune Lymphoproliferative Syndrome, Type Ii; Alps2 56
Autoimmune Lymphoproliferative Syndrome, Type 2 39
Autoimmune Lymphoproliferative Syndrome Type 2 6
Autoimmune Lymphoproliferative Syndrome 2a 73

Characteristics:

OMIM:

56
Inheritance:
autosomal dominant

Miscellaneous:
onset in infancy or childhood


HPO:

31
autoimmune lymphoproliferative syndrome, type iia:
Inheritance autosomal dominant inheritance
Onset and clinical course juvenile onset


Classifications:

MalaCards categories:
Global: Genetic diseases Rare diseases
Anatomical: Immune diseases Gastrointestinal diseases Blood diseases
See all MalaCards categories (disease lists)
ICD10: 32


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Summaries for Autoimmune Lymphoproliferative Syndrome, Type Iia

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UniProtKB/Swiss-Prot : 73 Autoimmune lymphoproliferative syndrome 2A: A disorder of apoptosis that manifests in early childhood and results in the accumulation of autoreactive lymphocytes. It is characterized by non-malignant lymphadenopathy with hepatosplenomegaly, and autoimmune hemolytic anemia, thrombocytopenia and neutropenia.

MalaCards based summary : Autoimmune Lymphoproliferative Syndrome, Type Iia, also known as autoimmune lymphoproliferative syndrome, type ii, is related to exanthem and autoimmune lymphoproliferative syndrome. An important gene associated with Autoimmune Lymphoproliferative Syndrome, Type Iia is CASP10 (Caspase 10), and among its related pathways/superpathways are Cell adhesion molecules (CAMs) and Hematopoietic Stem Cell Differentiation Pathways and Lineage-specific Markers. Affiliated tissues include t cells, b cells and lymph node, and related phenotypes are splenomegaly and hepatomegaly

Disease Ontology : 12 An autoimmune lymphoproliferative syndrome that has material basis in mutation in the CASP10 gene.

More information from OMIM: 603909
Sources

Related Diseases for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Diseases in the Lymphoproliferative Syndrome family:

Autoimmune Lymphoproliferative Syndrome Autoimmune Lymphoproliferative Syndrome, Type Iia
Lymphoproliferative Syndrome 1 Lymphoproliferative Syndrome 2
Autoimmune Lymphoproliferative Syndrome, Type Iii Autoimmune Lymphoproliferative Syndrome, Type V
Lymphoproliferative Syndrome 3

Diseases related to Autoimmune Lymphoproliferative Syndrome, Type Iia via text searches within MalaCards or GeneCards Suite gene sharing:

(show top 50) (show all 221)
# Related Disease Score Top Affiliating Genes
1 exanthem 29.9 CD8A CD4
2 autoimmune lymphoproliferative syndrome 29.3 CD8A CD4 CASP10
3 lymphoproliferative syndrome 10.1
4 pericarditis 10.1
5 juvenile rheumatoid arthritis 10.1
6 splenomegaly 10.1
7 systemic onset juvenile idiopathic arthritis 10.1
8 periodic fever, familial, autosomal dominant 10.0
9 alpha/beta t-cell lymphopenia with gamma/delta t-cell expansion, severe cytomegalovirus infection, and autoimmunity 10.0
10 lymphoma 10.0
11 cork-handlers' disease 9.9 CD8A CD4
12 syphilitic meningitis 9.9 CD8A CD4
13 ventilation pneumonitis 9.9 CD8A CD4
14 diffuse infiltrative lymphocytosis syndrome 9.9 CD8A CD4
15 chromosome 14q11-q22 deletion syndrome 9.9 CD8A CD4
16 diabetes mellitus, insulin-dependent, 23 9.9 CD8A CD4
17 bird fancier's lung 9.9 CD8A CD4
18 early yaws 9.9 CD8A CD4
19 parapsoriasis 9.9 CD8A CD4
20 norwegian scabies 9.9 CD8A CD4
21 metal allergy 9.9 CD8A CD4
22 variola major 9.9 CD8A CD4
23 follicular mucinosis 9.9 CD8A CD4
24 tertiary syphilis 9.9 CD8A CD4
25 syphilis 9.9 CD8A CD4
26 spongiotic dermatitis 9.9 CD8A CD4
27 acute retinal necrosis syndrome 9.9 CD8A CD4
28 granulomatous hepatitis 9.9 CD8A CD4
29 nickel allergic contact dermatitis 9.9 CD8A CD4
30 combined thymoma 9.9 CD8A CD4
31 west nile encephalitis 9.9 CD8A CD4
32 neurosarcoidosis 9.9 CD8A CD4
33 cd3zeta deficiency 9.9 CD8A CD4
34 immunodeficiency 18 9.9 CD8A CD4
35 cerebritis 9.9 CD8A CD4
36 acute interstitial pneumonia 9.9 CD8A CD4
37 parotid disease 9.9 CD8A CD4
38 superficial basal cell carcinoma 9.9 CD8A CD4
39 secondary syphilis 9.9 CD8A CD4
40 oral tuberculosis 9.9 CD8A CD4
41 oral hairy leukoplakia 9.9 CD8A CD4
42 farmer's lung 9.9 CD8A CD4
43 esophageal candidiasis 9.9 CD8A CD4
44 myeloid and lymphoid neoplasms associated with fgfr1 abnormalities 9.9 CD8A CD4
45 immunodeficiency 19 9.9 CD8A CD4
46 cardiomyopathy, familial hypertrophic, 9 9.9 CD8A CD4
47 pneumonic tularemia 9.9 CD8A CD4
48 tularemia 9.9 CD8A CD4
49 laryngeal tuberculosis 9.9 CD8A CD4
50 blastomycosis 9.9 CD8A CD4

Graphical network of the top 20 diseases related to Autoimmune Lymphoproliferative Syndrome, Type Iia:



Diseases related to Autoimmune Lymphoproliferative Syndrome, Type Iia
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Symptoms & Phenotypes for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Human phenotypes related to Autoimmune Lymphoproliferative Syndrome, Type Iia:

31 (show all 29)
# Description HPO Frequency HPO Source Accession
1 splenomegaly 31 HP:0001744
2 hepatomegaly 31 HP:0002240
3 urticaria 31 HP:0001025
4 nephrotic syndrome 31 HP:0000100
5 iron deficiency anemia 31 HP:0001891
6 vasculitis 31 HP:0002633
7 eosinophilia 31 HP:0001880
8 autoimmune thrombocytopenia 31 HP:0001973
9 autoimmune hemolytic anemia 31 HP:0001890
10 antineutrophil antibody positivity 31 HP:0003453
11 neutropenia in presence of anti-neutropil antibodies 31 HP:0001904
12 smooth muscle antibody positivity 31 HP:0003262
13 antinuclear antibody positivity 31 HP:0003493
14 nephritis 31 HP:0000123
15 antiphospholipid antibody positivity 31 HP:0003613
16 chronic noninfectious lymphadenopathy 31 HP:0002730
17 elevated proportion of cd4-negative, cd8-negative, alpha-beta regulatory t cells 31 HP:0002851
18 increased b cell count 31 HP:0005404
19 rheumatoid factor positive 31 HP:0002923
20 coombs-positive hemolytic anemia 31 HP:0004844
21 follicular hyperplasia 31 HP:0002729
22 malar rash 31 HP:0025300
23 increased circulating igg level 31 HP:0003237
24 increased circulating iga level 31 HP:0003261
25 platelet antibody positive 31 HP:0003454
26 increased circulating igm level 31 HP:0003496
27 reduced delayed hypersensitivity 31 HP:0002972
28 decreased lymphocyte apoptosis 31 HP:0002731
29 increased proportion of hla dr+ t cells 31 HP:0002853

Symptoms via clinical synopsis from OMIM:

56
Abdomen Spleen:
splenomegaly

Skin Nails Hair Skin:
urticaria
malar rash
vasculitis rash

Hematology:
iron deficiency anemia
eosinophilia
autoimmune thrombocytopenia
autoimmune hemolytic anemia
autoimmune neutropenia

Laboratory Abnormalities:
rheumatoid factor positive
platelet antibody positive
increased levels of igg
increased levels of iga
increased levels of igm
more
Abdomen Liver:
hepatomegaly

Genitourinary Kidneys:
nephrotic syndrome
nephritis
membranous glomerulonephropathy

Immunology:
chronic noninfectious lymphadenopathy
reduced delayed hypersensitivity
defective lymphocyte apoptosis
increased number of peripheral cd3+ t cells
increased number of cd4-/cd8- t cells expressing alpha/beta t-cell receptors
more

Clinical features from OMIM:

603909
Sources

Drugs & Therapeutics for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Search Clinical Trials , NIH Clinical Center for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Genetic Tests for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Genetic tests related to Autoimmune Lymphoproliferative Syndrome, Type Iia:

# Genetic test Affiliating Genes
1 Autoimmune Lymphoproliferative Syndrome, Type 2a 29 CASP10
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Anatomical Context for Autoimmune Lymphoproliferative Syndrome, Type Iia

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MalaCards organs/tissues related to Autoimmune Lymphoproliferative Syndrome, Type Iia:

40
T Cells, B Cells, Lymph Node, Smooth Muscle, Bone, Thymus, Lung
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Publications for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Articles related to Autoimmune Lymphoproliferative Syndrome, Type Iia:

# Title Authors PMID Year
1
Inherited human Caspase 10 mutations underlie defective lymphocyte and dendritic cell apoptosis in autoimmune lymphoproliferative syndrome type II. 54 61 56 6
10412980 1999
2
Genetic alterations in caspase-10 may be causative or protective in autoimmune lymphoproliferative syndrome. 56 6
16446975 2006
3
Analysis of protein-coding genetic variation in 60,706 humans. 6
27535533 2016
4
Autoimmune Lymphoproliferative Syndrome 6
20301287 2006
5
Clincal, immunologic, and genetic features of an autoimmune lymphoproliferative syndrome associated with abnormal lymphocyte apoptosis. 56
9028957 1997
6
Mutations in apoptosis genes: a pathogenetic factor for human disease. 54 61
11397650 2001
7
Exonic deletion of CASP10 in a patient presenting with systemic juvenile idiopathic arthritis, but not with autoimmune lymphoproliferative syndrome type IIa. 61
21382177 2011
8
Revision of the diagnosis of T-zone lymphoma in the father of a patient with autoimmune lymphoproliferative syndrome type II. 61
10520011 1999
9
Reversible monoclonal lymphadenopathy in autoimmune lymphoproliferative syndrome with functional FAS (CD95/APO-1) deficiency. 61
10403307 1999
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Variations for Autoimmune Lymphoproliferative Syndrome, Type Iia

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ClinVar genetic disease variations for Autoimmune Lymphoproliferative Syndrome, Type Iia:

6 (show all 35) ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎ ‎‎
# Gene Name Type Significance ClinVarId dbSNP ID GRCh37 Pos GRCh38 Pos
1 CASP10 NM_032977.3(CASP10):c.853C>T (p.Leu285Phe)SNV Pathogenic 7764 rs17860403 2:202072837-202072837 2:201208114-201208114
2 CASP10 NM_032977.3(CASP10):c.1216A>C (p.Ile406Leu)SNV Conflicting interpretations of pathogenicity 7769 rs80358239 2:202074086-202074086 2:201209363-201209363
3 CASP10 NM_032977.3(CASP10):c.1466G>A (p.Arg489Gln)SNV Conflicting interpretations of pathogenicity 333440 rs535121774 2:202082361-202082361 2:201217638-201217638
4 CASP10 NM_032977.3(CASP10):c.1321G>A (p.Ala441Thr)SNV Conflicting interpretations of pathogenicity 643723 2:202074191-202074191 2:201209468-201209468
5 CASP10 NM_032976.3(CASP10):c.*288_*294deldeletion Conflicting interpretations of pathogenicity 535760 rs747900630 2:202074072-202074078 2:201209349-201209355
6 CASP10 NM_032977.3(CASP10):c.310C>T (p.Arg104Ter)SNV Uncertain significance 571302 rs779212325 2:202050810-202050810 2:201186087-201186087
7 CASP10 NM_032977.3(CASP10):c.516C>G (p.Asp172Glu)SNV Uncertain significance 573967 rs1465733324 2:202057781-202057781 2:201193058-201193058
8 CASP10 NM_032977.3(CASP10):c.259C>T (p.Arg87Trp)SNV Uncertain significance 569038 rs551818122 2:202050759-202050759 2:201186036-201186036
9 CASP10 NM_032977.3(CASP10):c.1460T>G (p.Val487Gly)SNV Uncertain significance 566866 rs1559314420 2:202082355-202082355 2:201217632-201217632
10 CASP10 NM_032977.3(CASP10):c.226C>A (p.Pro76Thr)SNV Uncertain significance 577661 rs146696981 2:202050726-202050726 2:201186003-201186003
11 CASP10 NM_032977.3(CASP10):c.507C>G (p.Cys169Trp)SNV Uncertain significance 565644 rs774005416 2:202057772-202057772 2:201193049-201193049
12 CASP10 NM_032977.3(CASP10):c.1101G>A (p.Ser367=)SNV Uncertain significance 576382 rs1300529029 2:202073971-202073971 2:201209248-201209248
13 CASP10 NM_032977.3(CASP10):c.1197G>T (p.Gln399His)SNV Uncertain significance 582472 rs199626441 2:202074067-202074067 2:201209344-201209344
14 CASP10 NM_032977.3(CASP10):c.1297G>A (p.Glu433Lys)SNV Uncertain significance 581392 rs200540853 2:202074167-202074167 2:201209444-201209444
15 CASP10 NM_032976.3(CASP10):c.*357C>TSNV Uncertain significance 625903 rs1559309649 2:202074141-202074141 2:201209418-201209418
16 CASP10 NM_032977.3(CASP10):c.199G>T (p.Ala67Ser)SNV Uncertain significance 644332 2:202050699-202050699 2:201185976-201185976
17 CASP10 NM_032977.3(CASP10):c.413T>C (p.Leu138Pro)SNV Uncertain significance 659317 2:202052494-202052494 2:201187771-201187771
18 CASP10 NM_032977.3(CASP10):c.616G>A (p.Glu206Lys)SNV Uncertain significance 642131 2:202060603-202060603 2:201195880-201195880
19 CASP10 NM_032977.3(CASP10):c.620C>T (p.Ser207Leu)SNV Uncertain significance 653604 2:202060607-202060607 2:201195884-201195884
20 CASP10 NM_032977.3(CASP10):c.664A>G (p.Thr222Ala)SNV Uncertain significance 661386 2:202060651-202060651 2:201195928-201195928
21 CASP10 NM_032977.3(CASP10):c.910C>T (p.His304Tyr)SNV Uncertain significance 661762 2:202072894-202072894 2:201208171-201208171
22 CASP10 NM_032977.3(CASP10):c.1148C>A (p.Ala383Asp)SNV Uncertain significance 652716 2:202074018-202074018 2:201209295-201209295
23 CASP10 NM_032977.3(CASP10):c.1348C>T (p.Arg450Trp)SNV Uncertain significance 655373 2:202074218-202074218 2:201209495-201209495
24 CASP10 NC_000002.11:g.(?_202068433)_(202074305_?)deldeletion Uncertain significance 655232 2:202068433-202074305 2:201203710-201209582
25 CASP10 NM_032977.3(CASP10):c.478G>A (p.Gly160Ser)SNV Uncertain significance 467715 rs781000749 2:202057743-202057743 2:201193020-201193020
26 CASP10 NM_032977.3(CASP10):c.491A>C (p.Glu164Ala)SNV Uncertain significance 467716 rs1165543405 2:202057756-202057756 2:201193033-201193033
27 CASP10 NM_032977.3(CASP10):c.683C>T (p.Pro228Leu)SNV Uncertain significance 535761 rs143882052 2:202060670-202060670 2:201195947-201195947
28 CASP10 NM_032977.3(CASP10):c.920C>A (p.Ala307Asp)SNV Uncertain significance 535757 rs1291372845 2:202072904-202072904 2:201208181-201208181
29 CASP10 NM_032977.3(CASP10):c.247C>G (p.Leu83Val)SNV Uncertain significance 535759 rs759913674 2:202050747-202050747 2:201186024-201186024
30 CASP10 NM_032977.3(CASP10):c.953G>A (p.Gly318Glu)SNV Uncertain significance 535758 rs138931498 2:202073823-202073823 2:201209100-201209100
31 CASP10 NM_032976.3(CASP10):c.*179deldeletion Uncertain significance 535756 rs781003519 2:202073963-202073963 2:201209240-201209240
32 CASP10 NM_032977.3(CASP10):c.1228G>A (p.Val410Ile)SNV Benign/Likely benign 21727 rs13010627 2:202074098-202074098 2:201209375-201209375
33 CASP10 NM_032977.3(CASP10):c.1337A>G (p.Tyr446Cys)SNV Benign 21728 rs17860405 2:202074207-202074207 2:201209484-201209484
34 CASP10 NM_032977.3(CASP10):c.347+9G>TSNV Benign 333420 rs7608787 2:202050856-202050856 2:201186133-201186133
35 CASP10 NM_032977.3(CASP10):c.923-3C>TSNV Benign 333434 rs6753900 2:202073790-202073790 2:201209067-201209067

UniProtKB/Swiss-Prot genetic disease variations for Autoimmune Lymphoproliferative Syndrome, Type Iia:

73
# Symbol AA change Variation ID SNP ID
1 CASP10 p.Leu285Phe VAR_014071 rs17860403

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Expression for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Search GEO for disease gene expression data for Autoimmune Lymphoproliferative Syndrome, Type Iia.
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Pathways for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Pathways related to Autoimmune Lymphoproliferative Syndrome, Type Iia according to GeneCards Suite gene sharing:

# Super pathways Score Top Affiliating Genes
1
Cell adhesion molecules (CAMs) 36
11.62 CD8A CD4
2
Hematopoietic Stem Cell Differentiation Pathways and Lineage-specific Markers 64
11.5 CD8A CD4
3
S-1P Stimulated Signaling 63
11.46 CD4 CASP10
4
IL12-mediated signaling events 1
Show member pathways
 11.46 CD8A CD4
5
TCR signaling in naive CD4+ T cells 1
Show member pathways
 11.4 CD8A CD4
6
Hematopoietic cell lineage 36
11.32 CD8A CD4
7
Innate Lymphoid Cell Differentiation Pathways 64
11.16 CD8A CD4
8
Dendritic Cells Developmental Lineage Pathway 64
11.02 CD8A CD4
9
CTLA4 Signaling 63
10.81 CD8A CD4
10
Primary immunodeficiency 36
10.2 CD8A CD4
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GO Terms for Autoimmune Lymphoproliferative Syndrome, Type Iia

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Cellular components related to Autoimmune Lymphoproliferative Syndrome, Type Iia according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 T cell receptor complex GO:0042101 8.62 CD8A CD4

Biological processes related to Autoimmune Lymphoproliferative Syndrome, Type Iia according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 positive regulation of I-kappaB kinase/NF-kappaB signaling GO:0043123 9.26 CD4 CASP10
2 transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 9.16 CD8A CD4
3 T cell activation GO:0042110 8.96 CD8A CD4
4 cell surface receptor signaling pathway GO:0007166 8.8 CD8A CD4 CASP10

Molecular functions related to Autoimmune Lymphoproliferative Syndrome, Type Iia according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 coreceptor activity GO:0015026 8.62 CD8A CD4
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Sources for Autoimmune Lymphoproliferative Syndrome, Type Iia

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3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 EFO
18 ExPASy
19 FMA
28 GO
29 GTR
30 HMDB
31 HPO
32 ICD10
33 ICD10 via Orphanet
34 ICD9CM
35 IUPHAR
36 KEGG
37 LifeMap
39 LOVD
41 MedGen
43 MeSH
44 MESH via Orphanet
45 MGI
48 NCI
49 NCIt
50 NDF-RT
53 NINDS
54 Novoseek
56 OMIM
57 OMIM via Orphanet
61 PubMed
63 QIAGEN
68 SNOMED-CT via HPO
69 TGDB
70 Tocris
71 UMLS
72 UMLS via Orphanet
The MalaCards human disease database index: 1-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
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