MCID: BLR030
MIFTS: 29

Bilirubin, Serum Level of, Quantitative Trait Locus 1

Categories: Genetic diseases

Aliases & Classifications for Bilirubin, Serum Level of, Quantitative Trait Locus 1

MalaCards integrated aliases for Bilirubin, Serum Level of, Quantitative Trait Locus 1:

Name: Bilirubin, Serum Level of, Quantitative Trait Locus 1 57 29 6 40
Bilirubin, Serum Level of, Qtl1 57
Biliqtl1 57

Characteristics:

OMIM:

57
Inheritance:
major gene effect in 11.5% of persons analyzed


Classifications:



External Ids:

OMIM 57 601816
MedGen 42 C1866173
SNOMED-CT via HPO 69 26165005

Summaries for Bilirubin, Serum Level of, Quantitative Trait Locus 1

MalaCards based summary : Bilirubin, Serum Level of, Quantitative Trait Locus 1, also known as bilirubin, serum level of, qtl1, is related to descending colon cancer and dihydropyrimidine dehydrogenase deficiency. An important gene associated with Bilirubin, Serum Level of, Quantitative Trait Locus 1 is UGT1A1 (UDP Glucuronosyltransferase Family 1 Member A1), and among its related pathways/superpathways are Metabolism and Cytochrome P450 - arranged by substrate type. Affiliated tissues include colon, and related phenotypes are hyperbilirubinemia and Decreased shRNA abundance (Z-score < -2)

Description from OMIM: 601816

Related Diseases for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Graphical network of the top 20 diseases related to Bilirubin, Serum Level of, Quantitative Trait Locus 1:



Diseases related to Bilirubin, Serum Level of, Quantitative Trait Locus 1

Symptoms & Phenotypes for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Symptoms via clinical synopsis from OMIM:

57
Cardiac:
protective effect on cad

Lab:
elevated serum bilirubin


Clinical features from OMIM:

601816

Human phenotypes related to Bilirubin, Serum Level of, Quantitative Trait Locus 1:

32
# Description HPO Frequency HPO Source Accession
1 hyperbilirubinemia 32 HP:0002904

GenomeRNAi Phenotypes related to Bilirubin, Serum Level of, Quantitative Trait Locus 1 according to GeneCards Suite gene sharing:

26 (show all 21)
# Description GenomeRNAi Source Accession Score Top Affiliating Genes
1 Decreased shRNA abundance (Z-score < -2) GR00366-A-116 9.8 UGT1A4
2 Decreased shRNA abundance (Z-score < -2) GR00366-A-14 9.8 UGT1A4
3 Decreased shRNA abundance (Z-score < -2) GR00366-A-165 9.8 UGT1A5
4 Decreased shRNA abundance (Z-score < -2) GR00366-A-173 9.8 UGT1A4
5 Decreased shRNA abundance (Z-score < -2) GR00366-A-184 9.8 UGT1A5
6 Decreased shRNA abundance (Z-score < -2) GR00366-A-20 9.8 UGT1A4
7 Decreased shRNA abundance (Z-score < -2) GR00366-A-200 9.8 UGT1A3 UGT1A4
8 Decreased shRNA abundance (Z-score < -2) GR00366-A-204 9.8 UGT1A5
9 Decreased shRNA abundance (Z-score < -2) GR00366-A-211 9.8 UGT1A3 UGT1A4 UGT1A5
10 Decreased shRNA abundance (Z-score < -2) GR00366-A-216 9.8 UGT1A4
11 Decreased shRNA abundance (Z-score < -2) GR00366-A-28 9.8 UGT1A5
12 Increased shRNA abundance (Z-score > 2) GR00366-A-127 9.47 UGT1A3 UGT1A4
13 Increased shRNA abundance (Z-score > 2) GR00366-A-130 9.47 UGT1A7
14 Increased shRNA abundance (Z-score > 2) GR00366-A-138 9.47 UGT1A4
15 Increased shRNA abundance (Z-score > 2) GR00366-A-147 9.47 UGT1A3 UGT1A7
16 Increased shRNA abundance (Z-score > 2) GR00366-A-19 9.47 UGT1A7
17 Increased shRNA abundance (Z-score > 2) GR00366-A-21 9.47 UGT1A3 UGT1A4 UGT1A7
18 Increased shRNA abundance (Z-score > 2) GR00366-A-215 9.47 UGT1A3
19 Increased shRNA abundance (Z-score > 2) GR00366-A-52 9.47 UGT1A7
20 Increased shRNA abundance (Z-score > 2) GR00366-A-56 9.47 UGT1A7
21 Increased shRNA abundance (Z-score > 2) GR00366-A-81 9.47 UGT1A7

Drugs & Therapeutics for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Search Clinical Trials , NIH Clinical Center for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Genetic Tests for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Genetic tests related to Bilirubin, Serum Level of, Quantitative Trait Locus 1:

# Genetic test Affiliating Genes
1 Bilirubin, Serum Level of, Quantitative Trait Locus 1 29 UGT1A1

Anatomical Context for Bilirubin, Serum Level of, Quantitative Trait Locus 1

MalaCards organs/tissues related to Bilirubin, Serum Level of, Quantitative Trait Locus 1:

41
Colon

Publications for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Variations for Bilirubin, Serum Level of, Quantitative Trait Locus 1

ClinVar genetic disease variations for Bilirubin, Serum Level of, Quantitative Trait Locus 1:

6
# Gene Variation Type Significance SNP ID Assembly Location
1 UGT1A1 UGT1A1*28 duplication Conflicting interpretations of pathogenicity, Affects, association, drug response, other rs3064744 GRCh37 Chromosome 2, 234668881: 234668881
2 UGT1A1 UGT1A1*28 duplication Conflicting interpretations of pathogenicity, Affects, association, drug response, other rs3064744 GRCh38 Chromosome 2, 233760235: 233760235
3 UGT1A1 UGT1A1*6 single nucleotide variant drug response rs4148323 GRCh37 Chromosome 2, 234669144: 234669144
4 UGT1A1 UGT1A1*6 single nucleotide variant drug response rs4148323 GRCh38 Chromosome 2, 233760498: 233760498
5 UGT1A1 NM_000463.2(UGT1A1): c.864+2842G> T single nucleotide variant association rs6742078 GRCh37 Chromosome 2, 234672639: 234672639
6 UGT1A1 NM_000463.2(UGT1A1): c.864+2842G> T single nucleotide variant association rs6742078 GRCh38 Chromosome 2, 233763993: 233763993

Expression for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Search GEO for disease gene expression data for Bilirubin, Serum Level of, Quantitative Trait Locus 1.

Pathways for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Pathways related to Bilirubin, Serum Level of, Quantitative Trait Locus 1 according to GeneCards Suite gene sharing:

(show all 21)
# Super pathways Score Top Affiliating Genes
1
Show member pathways
13.84 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
2
Show member pathways
13.13 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
3
Show member pathways
12.79 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
4 12.46 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
5
Show member pathways
12.26 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
6 12.15 UGT1A1 UGT1A3 UGT1A4 UGT1A6 UGT1A7 UGT1A9
7
Show member pathways
11.81 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A8
8
Show member pathways
11.68 UGT1A1 UGT1A3 UGT1A9
9
Show member pathways
11.64 UGT1A1 UGT1A4 UGT1A6 UGT1A9
10
Show member pathways
11.63 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
11 11.62 UGT1A1 UGT1A3 UGT1A4 UGT1A6 UGT1A7 UGT1A9
12
Show member pathways
11.46 UGT1A3 UGT1A4
13
Show member pathways
11.42 UGT1A10 UGT1A3 UGT1A4 UGT1A8
14
Show member pathways
11.41 UGT1A1 UGT1A3 UGT1A4 UGT1A6 UGT1A8 UGT1A9
15 11.4 UGT1A1 UGT1A3 UGT1A4 UGT1A6 UGT1A9
16
Show member pathways
11.3 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A7
17
Show member pathways
11.17 UGT1A1 UGT1A8
18
Show member pathways
10.96 UGT1A1 UGT1A9
19 10.87 UGT1A3 UGT1A4 UGT1A9
20
Show member pathways
10.78 UGT1A4 UGT1A9
21 10.42 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A8 UGT1A9

GO Terms for Bilirubin, Serum Level of, Quantitative Trait Locus 1

Cellular components related to Bilirubin, Serum Level of, Quantitative Trait Locus 1 according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 membrane GO:0016020 9.97 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
2 integral component of membrane GO:0016021 9.91 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
3 endoplasmic reticulum GO:0005783 9.76 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A7
4 endoplasmic reticulum membrane GO:0005789 9.61 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
5 intracellular membrane-bounded organelle GO:0043231 9.28 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6

Biological processes related to Bilirubin, Serum Level of, Quantitative Trait Locus 1 according to GeneCards Suite gene sharing:

(show all 12)
# Name GO ID Score Top Affiliating Genes
1 flavonoid glucuronidation GO:0052696 9.81 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
2 retinoic acid metabolic process GO:0042573 9.72 UGT1A1 UGT1A3 UGT1A7 UGT1A8 UGT1A9
3 flavone metabolic process GO:0051552 9.65 UGT1A1 UGT1A10 UGT1A7 UGT1A8 UGT1A9
4 negative regulation of catalytic activity GO:0043086 9.61 UGT1A1 UGT1A7 UGT1A8
5 xenobiotic glucuronidation GO:0052697 9.61 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
6 xenobiotic metabolic process GO:0006805 9.51 UGT1A6 UGT1A9
7 drug metabolic process GO:0017144 9.49 UGT1A1 UGT1A7
8 coumarin metabolic process GO:0009804 9.48 UGT1A7 UGT1A8
9 heme catabolic process GO:0042167 9.46 UGT1A1 UGT1A4
10 bilirubin conjugation GO:0006789 9.4 UGT1A1 UGT1A4
11 negative regulation of steroid metabolic process GO:0045939 9.37 UGT1A1 UGT1A8
12 cellular glucuronidation GO:0052695 9.17 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A7

Molecular functions related to Bilirubin, Serum Level of, Quantitative Trait Locus 1 according to GeneCards Suite gene sharing:

(show all 11)
# Name GO ID Score Top Affiliating Genes
1 protein heterodimerization activity GO:0046982 9.97 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A7
2 glucuronosyltransferase activity GO:0015020 9.97 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
3 transferase activity, transferring glycosyl groups GO:0016757 9.91 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
4 transferase activity, transferring hexosyl groups GO:0016758 9.81 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
5 enzyme inhibitor activity GO:0004857 9.63 UGT1A1 UGT1A7 UGT1A8
6 UDP-glycosyltransferase activity GO:0008194 9.61 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
7 protein kinase C binding GO:0005080 9.49 UGT1A10 UGT1A7
8 steroid binding GO:0005496 9.48 UGT1A1 UGT1A8
9 retinoic acid binding GO:0001972 9.23 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A7
10 transferase activity GO:0016740 10.09 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A5 UGT1A6
11 protein homodimerization activity GO:0042803 10.01 UGT1A1 UGT1A10 UGT1A3 UGT1A4 UGT1A6 UGT1A7

Sources for Bilirubin, Serum Level of, Quantitative Trait Locus 1

3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 ExPASy
19 FMA
28 GO
29 GTR
30 HGMD
31 HMDB
32 HPO
33 ICD10
34 ICD10 via Orphanet
35 ICD9CM
36 IUPHAR
37 KEGG
38 LifeMap
40 LOVD
42 MedGen
44 MeSH
45 MESH via Orphanet
46 MGI
49 NCI
50 NCIt
51 NDF-RT
54 NINDS
55 Novoseek
57 OMIM
58 OMIM via Orphanet
62 PubMed
64 QIAGEN
69 SNOMED-CT via HPO
70 SNOMED-CT via Orphanet
71 TGDB
72 Tocris
73 UMLS
74 UMLS via Orphanet
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