MCID: CHR226
MIFTS: 31

Chromosome 1q41-Q42 Deletion Syndrome

Categories: Fetal diseases, Genetic diseases, Rare diseases

Aliases & Classifications for Chromosome 1q41-Q42 Deletion Syndrome

MalaCards integrated aliases for Chromosome 1q41-Q42 Deletion Syndrome:

Name: Chromosome 1q41-Q42 Deletion Syndrome 56 12 52 29 13 15
1q41-Q42 Microdeletion Syndrome 12 52
1q41q42 Microdeletion Syndrome 12 58
Holoprosencephaly 10, Included; Hpe10, Included 56
Deletion Syndrome, Chromosome 1q41-Q42 39
Holoprosencephaly 10, Included 56
1q41-Q42 Deletion Syndrome 52
Holoprosencephaly 10 71
Deletion 1q41-Q42 52
Monosomy 1q41-Q42 52
Monosomy 1q41q42 58
Hpe10, Included 56
Del(1)(q41q42) 58

Characteristics:

Orphanet epidemiological data:

58
1q41q42 microdeletion syndrome
Inheritance: Not applicable; Age of onset: Infancy,Neonatal;

OMIM:

56
Inheritance:
isolated cases

Miscellaneous:
highly variable phenotype
contiguous gene deletion syndrome
midline defects


HPO:

31
chromosome 1q41-q42 deletion syndrome:
Inheritance autosomal dominant inheritance sporadic


Classifications:

Orphanet: 58  
Developmental anomalies during embryogenesis


Summaries for Chromosome 1q41-Q42 Deletion Syndrome

NIH Rare Diseases : 52 Chromosome 1q41-q42 deletion syndrome is characterized by a small, but variable deletion in a particular place on the long arm of one copy of chromosome 1 , usually spanning several genes . There have been variable features described in the literature, and individuals have ranged from being mildly to severely affected. Features may include poor feeding in infancy; developmental delay including delayed or absent speech; and moderate to severe intellectual disability . Other features may include hypotonia ; short stature ; seizures ; heart defects ; structural brain anomalies (most commonly underdevelopment of the corpus callosum ); genitourinary abnormalities ; cleft palate ; microcephaly ; vision problems; hearing loss ; and other abnormalities. Some may have characteristic facial features. Researchers have suggested the features are caused by disruption of at least four genes.

MalaCards based summary : Chromosome 1q41-Q42 Deletion Syndrome, also known as 1q41-q42 microdeletion syndrome, is related to wdr26-related intellectual disability and cleft palate, isolated, and has symptoms including seizures An important gene associated with Chromosome 1q41-Q42 Deletion Syndrome is DEL1Q41Q42 (Chromosome 1q41-Q42 Deletion Syndrome). Affiliated tissues include brain, heart and eye, and related phenotypes are intellectual disability and neonatal hypotonia

Disease Ontology : 12 A chromosomal deletion syndrome that has material basis in deletion of the chromosome 1q41-q42 region.

More information from OMIM: 612530 PS236100

Related Diseases for Chromosome 1q41-Q42 Deletion Syndrome

Diseases related to Chromosome 1q41-Q42 Deletion Syndrome via text searches within MalaCards or GeneCards Suite gene sharing:

(show all 14)
# Related Disease Score Top Affiliating Genes
1 wdr26-related intellectual disability 10.5
2 cleft palate, isolated 10.3
3 diaphragmatic hernia, congenital 10.3
4 fryns syndrome 10.3
5 alacrima, achalasia, and mental retardation syndrome 10.3
6 coloboma of macula 10.2
7 pelger-huet anomaly 10.2
8 neural tube defects 10.2
9 global developmental delay, absent or hypoplastic corpus callosum, and dysmorphic facies 10.2
10 microphthalmia 10.2
11 visual epilepsy 10.2
12 holoprosencephaly 10.2
13 cleft lip 10.2
14 seizure disorder 10.2

Graphical network of the top 20 diseases related to Chromosome 1q41-Q42 Deletion Syndrome:



Diseases related to Chromosome 1q41-Q42 Deletion Syndrome

Symptoms & Phenotypes for Chromosome 1q41-Q42 Deletion Syndrome

Human phenotypes related to Chromosome 1q41-Q42 Deletion Syndrome:

58 31 (show all 40)
# Description HPO Frequency Orphanet Frequency HPO Source Accession
1 intellectual disability 58 31 hallmark (90%) Very frequent (99-80%) HP:0001249
2 neonatal hypotonia 58 31 hallmark (90%) Very frequent (99-80%) HP:0001319
3 short stature 58 31 hallmark (90%) Very frequent (99-80%) HP:0004322
4 frontal bossing 58 31 hallmark (90%) Very frequent (99-80%) HP:0002007
5 severe global developmental delay 58 31 hallmark (90%) Very frequent (99-80%) HP:0011344
6 seizure 31 hallmark (90%) HP:0001250
7 depressed nasal bridge 58 31 frequent (33%) Frequent (79-30%) HP:0005280
8 behavioral abnormality 58 31 frequent (33%) Frequent (79-30%) HP:0000708
9 thick vermilion border 58 31 frequent (33%) Frequent (79-30%) HP:0012471
10 talipes equinovarus 58 31 frequent (33%) Frequent (79-30%) HP:0001762
11 upslanted palpebral fissure 58 31 frequent (33%) Frequent (79-30%) HP:0000582
12 deeply set eye 58 31 frequent (33%) Frequent (79-30%) HP:0000490
13 underdeveloped nasal alae 58 31 frequent (33%) Frequent (79-30%) HP:0000430
14 broad nasal tip 58 31 frequent (33%) Frequent (79-30%) HP:0000455
15 small nail 58 31 frequent (33%) Frequent (79-30%) HP:0001792
16 coarse facial features 58 31 occasional (7.5%) Occasional (29-5%) HP:0000280
17 strabismus 58 31 occasional (7.5%) Occasional (29-5%) HP:0000486
18 cryptorchidism 58 31 occasional (7.5%) Occasional (29-5%) HP:0000028
19 holoprosencephaly 58 31 occasional (7.5%) Occasional (29-5%) HP:0001360
20 congenital diaphragmatic hernia 58 31 occasional (7.5%) Occasional (29-5%) HP:0000776
21 hypotelorism 58 31 occasional (7.5%) Occasional (29-5%) HP:0000601
22 hypergonadotropic hypogonadism 58 31 occasional (7.5%) Occasional (29-5%) HP:0000815
23 submucous cleft hard palate 58 31 occasional (7.5%) Occasional (29-5%) HP:0000176
24 pulmonary hypoplasia 58 31 occasional (7.5%) Occasional (29-5%) HP:0002089
25 abnormality iris morphology 58 31 occasional (7.5%) Occasional (29-5%) HP:0000525
26 hyposegmentation of neutrophil nuclei 58 31 occasional (7.5%) Occasional (29-5%) HP:0011447
27 global developmental delay 58 31 Very frequent (99-80%) HP:0001263
28 cleft palate 58 31 Occasional (29-5%) HP:0000175
29 seizures 58 Very frequent (99-80%)
30 microtia 31 HP:0008551
31 microcephaly 31 HP:0000252
32 anteverted nares 31 HP:0000463
33 growth delay 58 Very frequent (99-80%)
34 abnormality of the face 58 Very frequent (99-80%)
35 cleft upper lip 31 HP:0000204
36 microphthalmia 31 HP:0000568
37 preauricular skin tag 31 HP:0000384
38 vertebral segmentation defect 31 HP:0003422
39 abnormality of the genital system 58 Occasional (29-5%)
40 morphological abnormality of the central nervous system 58 Frequent (79-30%)

Symptoms via clinical synopsis from OMIM:

56
Head And Neck Nose:
depressed nasal bridge
anteverted nares

Head And Neck Head:
microcephaly
frontal bossing

Head And Neck Mouth:
cleft palate

Head And Neck Eyes:
hypotelorism
deep-set eyes
upslanting palpebral fissures

Skeletal Feet:
club feet

Respiratory Lung:
lung hypoplasia in those with diaphragmatic hernia

Neurologic Central Nervous System:
seizures
holoprosencephaly
developmental delay
mental retardation

Growth Height:
short stature

Genitourinary Internal Genitalia Male:
cryptorchidism

Head And Neck Face:
coarse facies
dysmorphic features

Chest Diaphragm:
diaphragmatic hernia

Clinical features from OMIM:

612530

UMLS symptoms related to Chromosome 1q41-Q42 Deletion Syndrome:


seizures

Drugs & Therapeutics for Chromosome 1q41-Q42 Deletion Syndrome

Search Clinical Trials , NIH Clinical Center for Chromosome 1q41-Q42 Deletion Syndrome

Genetic Tests for Chromosome 1q41-Q42 Deletion Syndrome

Genetic tests related to Chromosome 1q41-Q42 Deletion Syndrome:

# Genetic test Affiliating Genes
1 Chromosome 1q41-Q42 Deletion Syndrome 29

Anatomical Context for Chromosome 1q41-Q42 Deletion Syndrome

MalaCards organs/tissues related to Chromosome 1q41-Q42 Deletion Syndrome:

40
Brain, Heart, Eye, Lung, Skin, Neutrophil

Publications for Chromosome 1q41-Q42 Deletion Syndrome

Articles related to Chromosome 1q41-Q42 Deletion Syndrome:

(show all 12)
# Title Authors PMID Year
1
Genomic alterations that contribute to the development of isolated and non-isolated congenital diaphragmatic hernia. 56
21525063 2011
2
Characterization of the chromosome 1q41q42.12 region, and the candidate gene DISP1, in patients with CDH. 56
20799323 2010
3
Interstitial deletion 1q42 in a patient with agenesis of corpus callosum: Phenotype-genotype comparison to the 1q41q42 microdeletion suggests a contiguous 1q4 syndrome. 56
20358614 2010
4
Truncating loss-of-function mutations of DISP1 contribute to holoprosencephaly-like microform features in humans. 56
19184110 2009
5
The discovery of microdeletion syndromes in the post-genomic era: review of the methodology and characterization of a new 1q41q42 microdeletion syndrome. 56
17873649 2007
6
Array comparative genomic hybridization in patients with congenital diaphragmatic hernia: mapping of four CDH-critical regions and sequencing of candidate genes at 15q26.1-15q26.2. 56
16736036 2006
7
Holoprosencephaly Overview 6
20301702 2000
8
Holoprosencephaly: a paradigm for the complex genetics of brain development. 56
9728329 1998
9
Fryns syndrome survivors and neurologic outcome. 56
8599357 1995
10
Severe microphthalmia, diaphragmatic hernia and Fallot's tetralogy associated with a chromosome 1;15 translocation. 56
7894732 1994
11
Refinement of the critical region of 1q41q42 microdeletion syndrome identifies FBXO28 as a candidate causative gene for intellectual disability and seizures. 52
24357076 2014
12
A novel FBXO28 frameshift mutation in a child with developmental delay, dysmorphic features, and intractable epilepsy: A second gene that may contribute to the 1q41-q42 deletion phenotype. 61
30160831 2018

Variations for Chromosome 1q41-Q42 Deletion Syndrome

Expression for Chromosome 1q41-Q42 Deletion Syndrome

Search GEO for disease gene expression data for Chromosome 1q41-Q42 Deletion Syndrome.

Pathways for Chromosome 1q41-Q42 Deletion Syndrome

GO Terms for Chromosome 1q41-Q42 Deletion Syndrome

Sources for Chromosome 1q41-Q42 Deletion Syndrome

3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 EFO
18 ExPASy
19 FMA
28 GO
29 GTR
30 HMDB
31 HPO
32 ICD10
33 ICD10 via Orphanet
34 ICD9CM
35 IUPHAR
36 KEGG
37 LifeMap
39 LOVD
41 MedGen
43 MeSH
44 MESH via Orphanet
45 MGI
48 NCI
49 NCIt
50 NDF-RT
53 NINDS
54 Novoseek
56 OMIM
57 OMIM via Orphanet
61 PubMed
63 QIAGEN
68 SNOMED-CT via HPO
69 TGDB
70 Tocris
71 UMLS
72 UMLS via Orphanet
Content
Loading form....