DFNB15
MCID: DFN262
MIFTS: 29

Deafness, Autosomal Recessive 15 (DFNB15)

Categories: Blood diseases, Cardiovascular diseases, Ear diseases, Fetal diseases, Genetic diseases, Neuronal diseases, Rare diseases

Aliases & Classifications for Deafness, Autosomal Recessive 15

MalaCards integrated aliases for Deafness, Autosomal Recessive 15:

Name: Deafness, Autosomal Recessive 15 58 30 13 6 74
Dfnb15 58 12 76
Dfnb72 58 12 76
Dfnb95 58 12 76
Autosomal Recessive Nonsyndromic Deafness 15 12 15
Non-Syndromic Sensorineural Deafness Autosomal Recessive Type 15 76
Non-Syndromic Neurosensory Deafness Autosomal Recessive Type 15 76
Deafness, Autosomal Recessive 72; Dfnb72 58
Deafness, Autosomal Recessive 95; Dfnb95 58
Deafness, Autosomal Recessive, Type 15 41
Deafness, Autosomal Recessive, 15 76
Deafness, Autosomal Recessive 72 58
Deafness, Autosomal Recessive 95 58
Autosomal Recessive Deafness 15 12
Autosomal Recessive Deafness 72 12
Autosomal Recessive Deafness 95 12
Deafness Autosomal Recessive 72 76
Deafness Autosomal Recessive 95 76

Characteristics:

OMIM:

58
Inheritance:
autosomal recessive

Miscellaneous:
prelingual onset


HPO:

33
deafness, autosomal recessive 15:
Inheritance autosomal recessive inheritance


Classifications:



External Ids:

Disease Ontology 12 DOID:0110470
OMIM 58 601869
MeSH 45 D006319
ICD10 34 H90.3
MedGen 43 C1866094
SNOMED-CT via HPO 70 258211005
UMLS 74 C1866094

Summaries for Deafness, Autosomal Recessive 15

UniProtKB/Swiss-Prot : 76 Deafness, autosomal recessive, 15: A form of non-syndromic sensorineural hearing loss with prelingual onset. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information.

MalaCards based summary : Deafness, Autosomal Recessive 15, also known as dfnb15, is related to perrault syndrome 3 and ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus. An important gene associated with Deafness, Autosomal Recessive 15 is GIPC3 (GIPC PDZ Domain Containing Family Member 3). Affiliated tissues include brain, and related phenotypes are prelingual sensorineural hearing impairment and skeleton

Disease Ontology : 12 An autosomal recessive nonsyndromic deafness that has material basis in mutation in the GIPC3 gene on chromosome 19p13.

OMIM : 58 This form of autosomal recessive deafness is sensorineural and nonsyndromic, and shows prelingual onset (summary by Charizopoulou et al., 2011). (601869)

Related Diseases for Deafness, Autosomal Recessive 15

Diseases in the Familial Deafness family:

Deafness, Autosomal Dominant 1 Deafness, Autosomal Recessive 1a
Deafness, Autosomal Recessive 2 Deafness, Autosomal Dominant 2a
Deafness, Autosomal Recessive 3 Deafness, Autosomal Dominant 4a
Deafness, Autosomal Recessive 5 Deafness, Autosomal Dominant 6
Deafness, Autosomal Recessive 6 Deafness, Autosomal Recessive 7
Deafness, Autosomal Dominant 5 Deafness, Autosomal Recessive 9
Deafness, Autosomal Recessive 8 Deafness, Autosomal Dominant 10
Deafness, Autosomal Dominant 11 Deafness, Autosomal Dominant 9
Deafness, Autosomal Recessive 12 Deafness, Autosomal Dominant 7
Deafness, Autosomal Dominant 12 Deafness, Autosomal Dominant 3a
Deafness, Autosomal Dominant 13 Deafness, Autosomal Recessive 15
Deafness, Autosomal Recessive 18a Deafness, Autosomal Dominant 15
Deafness, Autosomal Recessive 17 Deafness, Autosomal Recessive 13
Deafness, Autosomal Dominant 17 Deafness, Autosomal Recessive 21
Deafness, Autosomal Recessive 14 Deafness, Autosomal Recessive 16
Deafness, Autosomal Dominant 16 Deafness, Autosomal Recessive 20
Deafness, Autosomal Dominant 20 Deafness, Autosomal Dominant 23
Deafness, Autosomal Recessive 26 Deafness, Autosomal Dominant 25
Deafness, Autosomal Recessive 27 Deafness, Autosomal Dominant 18
Deafness, Autosomal Dominant 24 Deafness, Autosomal Dominant 22
Deafness, Autosomal Dominant 30 Deafness, Autosomal Dominant 36
Deafness, Autosomal Dominant 21 Deafness, Autosomal Recessive 22
Deafness, Autosomal Recessive 31 Deafness, Autosomal Recessive 30
Deafness, Autosomal Recessive Deafness, Autosomal Recessive 33
Deafness, Autosomal Dominant 44 Deafness, Autosomal Dominant 52
Deafness, Autosomal Recessive 37 Deafness, Autosomal Dominant 48
Deafness, Autosomal Recessive 38 Deafness, Autosomal Dominant 41
Deafness, Autosomal Recessive 40 Deafness, Autosomal Recessive 39
Deafness, Autosomal Dominant 49 Deafness, Autosomal Dominant 43
Deafness, Autosomal Recessive 35 Deafness, Autosomal Dominant 28
Deafness, Autosomal Dominant 31 Deafness, Autosomal Dominant 47
Deafness, Autosomal Recessive 48 Deafness, Autosomal Recessive 23
Deafness, Autosomal Recessive 42 Deafness, Autosomal Recessive 46
Deafness, Autosomal Recessive 53 Deafness, Autosomal Recessive 28
Deafness, Autosomal Recessive 51 Deafness, Autosomal Recessive 47
Deafness, Autosomal Recessive 55 Deafness, Autosomal Dominant 53
Deafness, Autosomal Recessive 62 Deafness, Autosomal Recessive 49
Deafness, Autosomal Recessive 44 Deafness, Autosomal Recessive 66
Deafness, Autosomal Recessive 59 Deafness, Autosomal Recessive 65
Deafness, Autosomal Recessive 67 Deafness, Autosomal Recessive 68
Deafness, Autosomal Recessive 24 Deafness, Autosomal Recessive 63
Deafness, Autosomal Dominant 27 Deafness, Autosomal Recessive 45
Deafness, Autosomal Dominant 59 Deafness, Autosomal Dominant 3b
Deafness, Autosomal Dominant 2b Deafness, Autosomal Recessive 1b
Deafness, Autosomal Recessive 71 Deafness, Autosomal Dominant 50
Deafness, Autosomal Recessive 77 Deafness, Autosomal Recessive 25
Deafness, Autosomal Recessive 79 Deafness, Autosomal Recessive 84a
Deafness, Autosomal Recessive 85 Deafness, Autosomal Recessive 91
Deafness, Autosomal Dominant 51 Deafness, Autosomal Recessive 83
Deafness, Autosomal Recessive 74 Deafness, Autosomal Recessive 61
Deafness, Autosomal Recessive 89 Deafness, Autosomal Recessive 29
Deafness, Autosomal Dominant 64 Deafness, Autosomal Dominant 33
Deafness, Autosomal Recessive 96 Deafness, Autosomal Dominant 4b
Deafness, Autosomal Recessive 86 Deafness, Autosomal Recessive 98
Deafness, Autosomal Recessive 93 Deafness, Autosomal Recessive 70
Deafness, Autosomal Recessive 84b Deafness, Autosomal Recessive 18b
Deafness, Autosomal Recessive 88 Deafness, Autosomal Recessive 76
Deafness, Autosomal Dominant 56 Deafness, Autosomal Dominant 54
Deafness, Autosomal Dominant 58 Deafness, Autosomal Recessive 101
Deafness, Autosomal Recessive 102 Deafness, Autosomal Recessive 103
Deafness, Autosomal Dominant 65 Deafness, Autosomal Dominant 67
Deafness, Autosomal Dominant 40 Deafness, Autosomal Recessive 104
Deafness, Autosomal Dominant 69 Deafness, Autosomal Recessive 97
Deafness, Autosomal Dominant 68 Deafness, Autosomal Dominant 70
Deafness, Autosomal Dominant 66 Deafness, Autosomal Dominant 71
Deafness, Autosomal Dominant 72 Deafness, Autosomal Recessive 106
Deafness, Autosomal Recessive 107 Deafness, Autosomal Recessive 108
Deafness, Autosomal Dominant 73 Deafness, Autosomal Recessive 57
Deafness, Autosomal Recessive 109 Deafness, Autosomal Recessive 110
Deafness, Autosomal Dominant 74 Deafness, Autosomal Recessive 111
Deafness, Autosomal Recessive 112 Deafness, Autosomal Recessive 113
Deafness, Autosomal Recessive 100 Nonsyndromic Deafness
Autosomal Dominant Nonsyndromic Deafness Autosomal Recessive Nonsyndromic Deafness
Autosomal Recessive Nonsyndromic Deafness 106 Autosomal Recessive Nonsyndromic Deafness 107
Autosomal Recessive Nonsyndromic Deafness 108 Autosomal Dominant Nonsyndromic Deafness 71
Autosomal Dominant Nonsyndromic Deafness 72 Autosomal Dominant Nonsyndromic Deafness 73
Autosomal Dominant Nonsyndromic Deafness 34 Autosomal Recessive Nonsyndromic Deafness 3
Autosomal Recessive Nonsyndromic Deafness 32 Autosomal Recessive Nonsyndromic Deafness 36
Autosomal Recessive Nonsyndromic Deafness 86 Otof-Related Deafness

Diseases related to Deafness, Autosomal Recessive 15 via text searches within MalaCards or GeneCards Suite gene sharing:

# Related Disease Score Top Affiliating Genes
1 perrault syndrome 3 10.2
2 ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus 10.1
3 nonsyndromic deafness 10.1
4 autosomal recessive nonsyndromic deafness 10.1
5 deafness, autosomal recessive 68 9.6 PTPRS ZNRF4

Graphical network of the top 20 diseases related to Deafness, Autosomal Recessive 15:



Diseases related to Deafness, Autosomal Recessive 15

Symptoms & Phenotypes for Deafness, Autosomal Recessive 15

Human phenotypes related to Deafness, Autosomal Recessive 15:

33
# Description HPO Frequency HPO Source Accession
1 prelingual sensorineural hearing impairment 33 very rare (1%) HP:0000399

Symptoms via clinical synopsis from OMIM:

58
Head And Neck Ears:
hearing loss, moderate to severe, bilateral, nonprogressive

Clinical features from OMIM:

601869

MGI Mouse Phenotypes related to Deafness, Autosomal Recessive 15:

47
# Description MGI Source Accession Score Top Affiliating Genes
1 skeleton MP:0005390 9.02 CLPP CNBP PTPRS SNCA SPON1

Drugs & Therapeutics for Deafness, Autosomal Recessive 15

Search Clinical Trials , NIH Clinical Center for Deafness, Autosomal Recessive 15

Genetic Tests for Deafness, Autosomal Recessive 15

Genetic tests related to Deafness, Autosomal Recessive 15:

# Genetic test Affiliating Genes
1 Deafness, Autosomal Recessive 15 30 GIPC3

Anatomical Context for Deafness, Autosomal Recessive 15

MalaCards organs/tissues related to Deafness, Autosomal Recessive 15:

42
Brain

Publications for Deafness, Autosomal Recessive 15

Articles related to Deafness, Autosomal Recessive 15:

# Title Authors Year
1
Gipc3 mutations associated with audiogenic seizures and sensorineural hearing loss in mouse and human. ( 21326233 )
2011
2
Mutations of GIPC3 cause nonsyndromic hearing loss DFNB72 but not DFNB81 that also maps to chromosome 19p. ( 21660509 )
2011
3
The autosomal recessive nonsyndromic deafness locus DFNB72 is located on chromosome 19p13.3. ( 17690910 )
2007
4
MYO1F as a candidate gene for nonsyndromic deafness, DFNB15. ( 11493199 )
2001
5
DFNB15: autosomal recessive non-syndromic hearing loss gene-chromosome 3q, 19p or digenic recessive inheritance? ( 10868231 )
2000
6
New gene for autosomal recessive non-syndromic hearing loss maps to either chromosome 3q or 19p. ( 9286457 )
1997

Variations for Deafness, Autosomal Recessive 15

UniProtKB/Swiss-Prot genetic disease variations for Deafness, Autosomal Recessive 15:

76
# Symbol AA change Variation ID SNP ID
1 GIPC3 p.Gly46Arg VAR_065967 rs946085339
2 GIPC3 p.Met88Ile VAR_065968 rs121465271
3 GIPC3 p.Gly94Asp VAR_065969 rs763523474
4 GIPC3 p.Arg189Cys VAR_065970 rs387907002
5 GIPC3 p.Thr221Ile VAR_065971 rs761543680
6 GIPC3 p.Gly256Asp VAR_065972 rs387907001
7 GIPC3 p.Leu262Arg VAR_065973 rs387906999

ClinVar genetic disease variations for Deafness, Autosomal Recessive 15:

6 (show all 16)
# Gene Variation Type Significance SNP ID Assembly Location
1 GIPC3 NM_133261.2(GIPC3): c.785T> G (p.Leu262Arg) single nucleotide variant Pathogenic rs387906999 GRCh37 Chromosome 19, 3589908: 3589908
2 GIPC3 NM_133261.2(GIPC3): c.785T> G (p.Leu262Arg) single nucleotide variant Pathogenic rs387906999 GRCh38 Chromosome 19, 3589910: 3589910
3 GIPC3 NM_133261.2(GIPC3): c.903G> A (p.Trp301Ter) single nucleotide variant Pathogenic rs387907000 GRCh37 Chromosome 19, 3590152: 3590152
4 GIPC3 NM_133261.2(GIPC3): c.903G> A (p.Trp301Ter) single nucleotide variant Pathogenic rs387907000 GRCh38 Chromosome 19, 3590154: 3590154
5 GIPC3 GIPC3, 1-BP DUP, 685G duplication Pathogenic
6 GIPC3 NM_133261.2(GIPC3): c.767G> A (p.Gly256Asp) single nucleotide variant Pathogenic rs387907001 GRCh37 Chromosome 19, 3589890: 3589890
7 GIPC3 NM_133261.2(GIPC3): c.767G> A (p.Gly256Asp) single nucleotide variant Pathogenic rs387907001 GRCh38 Chromosome 19, 3589892: 3589892
8 GIPC3 GIPC3, GLY46ARG single nucleotide variant Pathogenic
9 GIPC3 NM_133261.2(GIPC3): c.565C> T (p.Arg189Cys) single nucleotide variant Pathogenic rs387907002 GRCh37 Chromosome 19, 3586965: 3586965
10 GIPC3 NM_133261.2(GIPC3): c.565C> T (p.Arg189Cys) single nucleotide variant Pathogenic rs387907002 GRCh38 Chromosome 19, 3586967: 3586967
11 GIPC3 NM_133261.2(GIPC3): c.545A> C (p.Lys182Thr) single nucleotide variant Uncertain significance rs904746365 GRCh38 Chromosome 19, 3586947: 3586947
12 GIPC3 NM_133261.2(GIPC3): c.545A> C (p.Lys182Thr) single nucleotide variant Uncertain significance rs904746365 GRCh37 Chromosome 19, 3586945: 3586945
13 GIPC3 NM_133261.2(GIPC3): c.937T> C (p.Ter313Gln) single nucleotide variant Likely pathogenic GRCh38 Chromosome 19, 3590188: 3590188
14 GIPC3 NM_133261.2(GIPC3): c.937T> C (p.Ter313Gln) single nucleotide variant Likely pathogenic GRCh37 Chromosome 19, 3590186: 3590186
15 GIPC3 NM_133261.2(GIPC3): c.724G> T (p.Glu242Ter) single nucleotide variant Pathogenic GRCh38 Chromosome 19, 3589849: 3589849
16 GIPC3 NM_133261.2(GIPC3): c.724G> T (p.Glu242Ter) single nucleotide variant Pathogenic GRCh37 Chromosome 19, 3589847: 3589847

Expression for Deafness, Autosomal Recessive 15

Search GEO for disease gene expression data for Deafness, Autosomal Recessive 15.

Pathways for Deafness, Autosomal Recessive 15

GO Terms for Deafness, Autosomal Recessive 15

Cellular components related to Deafness, Autosomal Recessive 15 according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 synaptic vesicle membrane GO:0030672 8.62 PTPRS SNCA

Sources for Deafness, Autosomal Recessive 15

3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 EFO
18 ExPASy
20 FMA
29 GO
30 GTR
31 HGMD
32 HMDB
33 HPO
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35 ICD10 via Orphanet
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45 MeSH
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47 MGI
50 NCI
51 NCIt
52 NDF-RT
55 NINDS
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58 OMIM
59 OMIM via Orphanet
63 PubMed
65 QIAGEN
70 SNOMED-CT via HPO
71 SNOMED-CT via Orphanet
72 TGDB
73 Tocris
74 UMLS
75 UMLS via Orphanet
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