BFH
MCID: HMT008
MIFTS: 45

Hematuria, Benign Familial (BFH)

Categories: Genetic diseases, Nephrological diseases

Aliases & Classifications for Hematuria, Benign Familial

MalaCards integrated aliases for Hematuria, Benign Familial:

Name: Hematuria, Benign Familial 58 76 13 74
Benign Familial Hematuria 77 38 30 6
Thin Membrane Nephropathy 58 76
Bfh 58 76
Tmn 58 76
Thin-Basement-Membrane Nephropathy 58
Thin Basement Membrane Nephropathy 76
Thin Membrane Nephropathy; Tmn 58
Thin Basement Membrane Disease 74
Hematuria, Benign, Familial ) 41
Hematuria, Familial Benign 58
Hematuria Benign Familial 56
Hematuria 45

Characteristics:

OMIM:

58
Inheritance:
autosomal dominant

Miscellaneous:
onset usually in childhood
nonprogressive
does not result in renal failure


HPO:

33
hematuria, benign familial:
Onset and clinical course nonprogressive
Inheritance autosomal dominant inheritance


Classifications:



External Ids:

OMIM 58 141200
KEGG 38 H00582
MeSH 45 D006417

Summaries for Hematuria, Benign Familial

OMIM : 58 Benign familial hematuria is an autosomal dominant condition manifest as nonprogressive isolated microscopic hematuria that does not result in renal failure. It is characterized pathologically by thinning of the glomerular basement membrane (GBM), and can be considered the mildest end of the spectrum of renal diseases due to type IV collagen defects of the basement membrane. The most severe end of the spectrum is represented by Alport syndrome (301050; 203780, 104200), which results in end-stage renal failure and may be associated with hearing loss and ocular anomalies (review by Lemmink et al. (1996)). (141200)

MalaCards based summary : Hematuria, Benign Familial, also known as benign familial hematuria, is related to kidney disease and focal segmental glomerulosclerosis. An important gene associated with Hematuria, Benign Familial is COL4A4 (Collagen Type IV Alpha 4 Chain), and among its related pathways/superpathways are Focal adhesion and ECM-receptor interaction. Affiliated tissues include kidney, prostate and t cells, and related phenotypes are hematuria and thin glomerular basement membrane

UniProtKB/Swiss-Prot : 76 Hematuria, benign familial: An autosomal dominant condition characterized by non-progressive isolated microscopic hematuria that does not result in renal failure. It is characterized pathologically by thinning of the glomerular basement membrane.

Wikipedia : 77 Thin basement membrane disease (TBMD, also known as benign familial hematuria and thin basement membrane... more...

Related Diseases for Hematuria, Benign Familial

Diseases related to Hematuria, Benign Familial via text searches within MalaCards or GeneCards Suite gene sharing:

(show top 50) (show all 330)
# Related Disease Score Top Affiliating Genes
1 kidney disease 29.7 COL4A3 COL4A4 COL4A5
2 focal segmental glomerulosclerosis 29.6 COL4A3 COL4A4 COL4A5
3 glomerulonephritis 29.4 COL4A3 COL4A4 COL4A5
4 leiomyomatosis 28.5 COL4A3 COL4A4 COL4A5
5 loin pain hematuria syndrome 12.5
6 alport syndrome 12.2
7 leiomyomatosis of esophagus, cataract and hematuria 12.1
8 angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps 11.7
9 hemorrhagic cystitis 11.5
10 uveal coloboma-cleft lip and palate-intellectual disability 11.4
11 henoch-schoenlein purpura 11.4
12 schistosomiasis 11.3
13 acquired hemophilia 11.2
14 paroxysmal nocturnal hemoglobinuria 11.2
15 mesangial proliferative glomerulonephritis 11.2
16 acquired hemophilia a 11.2
17 dense deposit disease 11.2
18 glomerulopathy with fibronectin deposits 2 11.2
19 alport syndrome 3, autosomal dominant 11.1
20 alport syndrome 2, autosomal recessive 11.1
21 factor x deficiency 11.1
22 iga nephropathy 1 11.1
23 cfhr5 deficiency 11.1
24 small cell carcinoma of the bladder 11.1
25 glomerulopathy with fibronectin deposits 1 10.9
26 hypoparathyroidism, sensorineural deafness, and renal disease 10.9
27 wilms tumor 1 10.9
28 cystinuria 10.9
29 factor vii deficiency 10.9
30 glanzmann thrombasthenia 10.9
31 xanthinuria, type i 10.9
32 complement factor h deficiency 10.9
33 hyperoxaluria, primary, type iii 10.9
34 prothrombin deficiency, congenital 10.9
35 focal segmental glomerulosclerosis 6 10.9
36 adenine phosphoribosyltransferase deficiency 10.9
37 iga nephropathy 3 10.9
38 eastern equine encephalitis 10.9
39 gnathomiasis 10.9
40 pelvic lipomatosis 10.9
41 c3 glomerulopathy 10.9
42 hereditary paraganglioma-pheochromocytoma syndromes 10.9
43 familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis 10.9
44 fibrillary glomerulonephritis 10.9
45 hemoglobin se disease 10.9
46 immunotactoid glomerulopathy 10.9
47 immunotactoid or fibrillary glomerulopathy 10.9
48 renal nutcracker syndrome 10.9
49 urachal cancer 10.9
50 urachal cyst 10.9

Graphical network of the top 20 diseases related to Hematuria, Benign Familial:



Diseases related to Hematuria, Benign Familial

Symptoms & Phenotypes for Hematuria, Benign Familial

Human phenotypes related to Hematuria, Benign Familial:

33
# Description HPO Frequency HPO Source Accession
1 hematuria 33 HP:0000790
2 thin glomerular basement membrane 33 HP:0012577

Symptoms via clinical synopsis from OMIM:

58
Genitourinary Kidneys:
hematuria, microscopic
thin glomerular basement membrane

Clinical features from OMIM:

141200

MGI Mouse Phenotypes related to Hematuria, Benign Familial:

47
# Description MGI Source Accession Score Top Affiliating Genes
1 renal/urinary system MP:0005367 9.13 COL4A3 COL4A4 COL4A5
2 vision/eye MP:0005391 8.8 COL4A3 COL4A4 COL4A5

Drugs & Therapeutics for Hematuria, Benign Familial

Search Clinical Trials , NIH Clinical Center for Hematuria, Benign Familial

Cochrane evidence based reviews: hematuria

Genetic Tests for Hematuria, Benign Familial

Genetic tests related to Hematuria, Benign Familial:

# Genetic test Affiliating Genes
1 Benign Familial Hematuria 30 COL4A3 COL4A4

Anatomical Context for Hematuria, Benign Familial

MalaCards organs/tissues related to Hematuria, Benign Familial:

42
Kidney, Prostate, T Cells, Bone, Heart, B Cells, Pancreas

Publications for Hematuria, Benign Familial

Articles related to Hematuria, Benign Familial:

(show all 18)
# Title Authors Year
1
The COL4A3 and COL4A4 Digenic Mutations in cis Result in Benign Familial Hematuria in a Large Chinese Family. ( 29742505 )
2018
2
A family with X-linked benign familial hematuria. ( 19937058 )
2010
3
Sixteen novel mutations identified in COL4A3, COL4A4, and COL4A5 genes in Slovenian families with Alport syndrome and benign familial hematuria. ( 17396119 )
2007
4
[From Alport syndrome to benign familial hematuria: clinical and genetic aspect]. ( 16895672 )
2005
5
Alport syndrome and benign familial hematuria (thin basement membrane disease) in two brothers of a family with hematuria. ( 14524583 )
2003
6
Autosomal recessive Alport's syndrome and benign familial hematuria are collagen type IV diseases. ( 14582039 )
2003
7
Mutations in theCOL4A4 and COL4A3 genes cause familial benign hematuria. ( 11961012 )
2002
8
Benign familial hematuria associated with a novel COL4A4 mutation. ( 11685592 )
2001
9
Evidence for genetic heterogeneity in benign familial hematuria. ( 10460935 )
1999
10
Benign familial hematuria due to mutation of the type IV collagen alpha4 gene. ( 8787673 )
1996
11
Benign familial hematuria: a clinical and histological study. ( 2282828 )
1990
12
Establishing the diagnosis of benign familial hematuria. The importance of examining the urine sediment of family members. ( 3352118 )
1988
13
Benign familial hematuria. ( 3395216 )
1988
14
Benign familial hematuria. ( 3404632 )
1988
15
Electron microscopy for measurement of glomerular basement membrane width in children with benign familial hematuria. ( 6545132 )
1984
16
The glomerular basement membrane in benign familial hematuria. ( 7055992 )
1982
17
The nonspecificity of the ultrastructural alterations in hereditary nephritis with additional observations on benign familial hematuria. ( 4610279 )
1974
18
Benign familial hematuria. ( 4899625 )
1969

Variations for Hematuria, Benign Familial

UniProtKB/Swiss-Prot genetic disease variations for Hematuria, Benign Familial:

76
# Symbol AA change Variation ID SNP ID
1 COL4A3 p.Gly985Val VAR_030948 rs121912827
2 COL4A3 p.Gly1015Glu VAR_030949 rs121912826
3 COL4A4 p.Gly897Glu VAR_001912 rs121912860
4 COL4A4 p.Gly116Glu VAR_031623
5 COL4A4 p.Gly960Arg VAR_031624 rs769783985
6 COL4A4 p.Gly999Glu VAR_031625 rs13027659
7 COL4A4 p.Pro1132Leu VAR_031626

ClinVar genetic disease variations for Hematuria, Benign Familial:

6 (show top 50) (show all 58)
# Gene Variation Type Significance SNP ID Assembly Location
1 COL4A4 NM_000092.4(COL4A4): c.2690G> A (p.Gly897Glu) single nucleotide variant Pathogenic/Likely pathogenic rs121912860 GRCh37 Chromosome 2, 227920687: 227920687
2 COL4A4 NM_000092.4(COL4A4): c.2690G> A (p.Gly897Glu) single nucleotide variant Pathogenic/Likely pathogenic rs121912860 GRCh38 Chromosome 2, 227055971: 227055971
3 COL4A4 NM_000092.4(COL4A4): c.3222dup (p.Gly1075Argfs) duplication Pathogenic GRCh37 Chromosome 2, 227912258: 227912258
4 COL4A4 NM_000092.4(COL4A4): c.3222dup (p.Gly1075Argfs) duplication Pathogenic GRCh38 Chromosome 2, 227047542: 227047542
5 COL4A4 NM_000092.4(COL4A4): c.2878G> C (p.Gly960Arg) single nucleotide variant Pathogenic GRCh38 Chromosome 2, 227052395: 227052395
6 COL4A4 NM_000092.4(COL4A4): c.2878G> C (p.Gly960Arg) single nucleotide variant Pathogenic GRCh37 Chromosome 2, 227917111: 227917111
7 COL4A3 NM_000091.4(COL4A3): c.4441C> T (p.Arg1481Ter) single nucleotide variant Pathogenic rs121912824 GRCh37 Chromosome 2, 228172614: 228172614
8 COL4A3 NM_000091.4(COL4A3): c.4441C> T (p.Arg1481Ter) single nucleotide variant Pathogenic rs121912824 GRCh38 Chromosome 2, 227307898: 227307898
9 COL4A3 NM_000091.4(COL4A3): c.3044G> A (p.Gly1015Glu) single nucleotide variant Pathogenic rs121912826 GRCh37 Chromosome 2, 228154778: 228154778
10 COL4A3 NM_000091.4(COL4A3): c.3044G> A (p.Gly1015Glu) single nucleotide variant Pathogenic rs121912826 GRCh38 Chromosome 2, 227290062: 227290062
11 COL4A3 NM_000091.4(COL4A3): c.2954G> T (p.Gly985Val) single nucleotide variant Conflicting interpretations of pathogenicity rs121912827 GRCh37 Chromosome 2, 228153938: 228153938
12 COL4A3 NM_000091.4(COL4A3): c.2954G> T (p.Gly985Val) single nucleotide variant Conflicting interpretations of pathogenicity rs121912827 GRCh38 Chromosome 2, 227289222: 227289222
13 COL4A4 NM_000092.4(COL4A4): c.2986G> A (p.Gly996Arg) single nucleotide variant Pathogenic rs370474706 GRCh37 Chromosome 2, 227915857: 227915857
14 COL4A4 NM_000092.4(COL4A4): c.2986G> A (p.Gly996Arg) single nucleotide variant Pathogenic rs370474706 GRCh38 Chromosome 2, 227051141: 227051141
15 COL4A4 NM_000092.4(COL4A4): c.2320G> C (p.Gly774Arg) single nucleotide variant Likely pathogenic rs569681869 GRCh37 Chromosome 2, 227924184: 227924184
16 COL4A4 NM_000092.4(COL4A4): c.2320G> C (p.Gly774Arg) single nucleotide variant Likely pathogenic rs569681869 GRCh38 Chromosome 2, 227059468: 227059468
17 COL4A4 NM_000092.4(COL4A4): c.1100-2A> C single nucleotide variant Pathogenic rs869025329 GRCh37 Chromosome 2, 227963516: 227963516
18 COL4A4 NM_000092.4(COL4A4): c.1100-2A> C single nucleotide variant Pathogenic rs869025329 GRCh38 Chromosome 2, 227098800: 227098800
19 COL4A3 NM_000091.4(COL4A3): c.765G> T (p.Thr255=) single nucleotide variant Pathogenic rs869025328 GRCh37 Chromosome 2, 228118354: 228118354
20 COL4A3 NM_000091.4(COL4A3): c.765G> T (p.Thr255=) single nucleotide variant Pathogenic rs869025328 GRCh38 Chromosome 2, 227253638: 227253638
21 COL4A3 NM_000091.4(COL4A3): c.765+2T> C single nucleotide variant Pathogenic rs869025326 GRCh37 Chromosome 2, 228118356: 228118356
22 COL4A3 NM_000091.4(COL4A3): c.765+2T> C single nucleotide variant Pathogenic rs869025326 GRCh38 Chromosome 2, 227253640: 227253640
23 COL4A3 NM_000091.4(COL4A3): c.3410G> A (p.Gly1137Asp) single nucleotide variant Pathogenic rs869025327 GRCh37 Chromosome 2, 228159278: 228159278
24 COL4A3 NM_000091.4(COL4A3): c.3410G> A (p.Gly1137Asp) single nucleotide variant Pathogenic rs869025327 GRCh38 Chromosome 2, 227294562: 227294562
25 COL4A3 NM_000091.4(COL4A3): c.833dupT (p.Pro279Alafs) duplication Likely pathogenic rs1363680371 GRCh37 Chromosome 2, 228119376: 228119376
26 COL4A3 NM_000091.4(COL4A3): c.833dupT (p.Pro279Alafs) duplication Likely pathogenic rs1363680371 GRCh38 Chromosome 2, 227254660: 227254660
27 COL4A3 NM_000091.4(COL4A3): c.765G> A (p.Thr255=) single nucleotide variant Uncertain significance rs869025328 GRCh38 Chromosome 2, 227253638: 227253638
28 COL4A3 NM_000091.4(COL4A3): c.765G> A (p.Thr255=) single nucleotide variant Uncertain significance rs869025328 GRCh37 Chromosome 2, 228118354: 228118354
29 COL4A3 NM_000091.4(COL4A3): c.2371C> T (p.Arg791Ter) single nucleotide variant Pathogenic/Likely pathogenic rs1060499654 GRCh38 Chromosome 2, 227280587: 227280587
30 COL4A3 NM_000091.4(COL4A3): c.2371C> T (p.Arg791Ter) single nucleotide variant Pathogenic/Likely pathogenic rs1060499654 GRCh37 Chromosome 2, 228145303: 228145303
31 COL4A3 NM_000091.4(COL4A3): c.2657-1G> T single nucleotide variant Uncertain significance rs373324875 GRCh37 Chromosome 2, 228148482: 228148482
32 COL4A3 NM_000091.4(COL4A3): c.2657-1G> T single nucleotide variant Uncertain significance rs373324875 GRCh38 Chromosome 2, 227283766: 227283766
33 COL4A3 NM_000091.4(COL4A3): c.1372G> C (p.Gly458Arg) single nucleotide variant Likely pathogenic rs757341933 GRCh38 Chromosome 2, 227266473: 227266473
34 COL4A3 NM_000091.4(COL4A3): c.1372G> C (p.Gly458Arg) single nucleotide variant Likely pathogenic rs757341933 GRCh37 Chromosome 2, 228131189: 228131189
35 COL4A3 NM_000091.4(COL4A3): c.441G> A (p.Pro147=) single nucleotide variant Uncertain significance rs373559251 GRCh37 Chromosome 2, 228111454: 228111454
36 COL4A3 NM_000091.4(COL4A3): c.441G> A (p.Pro147=) single nucleotide variant Uncertain significance rs373559251 GRCh38 Chromosome 2, 227246738: 227246738
37 COL4A3 NM_000091.4(COL4A3): c.4510T> C (p.Phe1504Leu) single nucleotide variant Uncertain significance rs201671013 GRCh37 Chromosome 2, 228173662: 228173662
38 COL4A3 NM_000091.4(COL4A3): c.4510T> C (p.Phe1504Leu) single nucleotide variant Uncertain significance rs201671013 GRCh38 Chromosome 2, 227308946: 227308946
39 COL4A3 NM_000091.4(COL4A3): c.4295G> A (p.Arg1432His) single nucleotide variant Uncertain significance rs200509072 GRCh37 Chromosome 2, 228172468: 228172468
40 COL4A3 NM_000091.4(COL4A3): c.4295G> A (p.Arg1432His) single nucleotide variant Uncertain significance rs200509072 GRCh38 Chromosome 2, 227307752: 227307752
41 CLCNKB NM_000085.4(CLCNKB): c.700T> C (p.Trp234Arg) single nucleotide variant Uncertain significance rs144517772 GRCh37 Chromosome 1, 16375659: 16375659
42 CLCNKB NM_000085.4(CLCNKB): c.700T> C (p.Trp234Arg) single nucleotide variant Uncertain significance rs144517772 GRCh38 Chromosome 1, 16049164: 16049164
43 CLCNKB NM_000085.4(CLCNKB): c.937_940dup (p.Arg314Lysfs) duplication Likely pathogenic rs779593707 GRCh38 Chromosome 1, 16049885: 16049888
44 CLCNKB NM_000085.4(CLCNKB): c.937_940dup (p.Arg314Lysfs) duplication Likely pathogenic rs779593707 GRCh37 Chromosome 1, 16376380: 16376383
45 COL4A4 NM_000092.4(COL4A4): c.4394G> A (p.Gly1465Asp) single nucleotide variant Conflicting interpretations of pathogenicity rs533297350 GRCh38 Chromosome 2, 227010441: 227010441
46 COL4A4 NM_000092.4(COL4A4): c.4394G> A (p.Gly1465Asp) single nucleotide variant Conflicting interpretations of pathogenicity rs533297350 GRCh37 Chromosome 2, 227875157: 227875157
47 COL4A3 NM_000091.4(COL4A3): c.2746+17C> T single nucleotide variant Uncertain significance rs765408537 GRCh37 Chromosome 2, 228148589: 228148589
48 COL4A3 NM_000091.4(COL4A3): c.2746+17C> T single nucleotide variant Uncertain significance rs765408537 GRCh38 Chromosome 2, 227283873: 227283873
49 COL4A5 NM_033380.2(COL4A5): c.808G> A (p.Gly270Arg) single nucleotide variant Uncertain significance rs1556406783 GRCh38 Chromosome X, 108580560: 108580560
50 COL4A5 NM_033380.2(COL4A5): c.808G> A (p.Gly270Arg) single nucleotide variant Uncertain significance rs1556406783 GRCh37 Chromosome X, 107823790: 107823790

Expression for Hematuria, Benign Familial

Search GEO for disease gene expression data for Hematuria, Benign Familial.

Pathways for Hematuria, Benign Familial

Pathways related to Hematuria, Benign Familial according to KEGG:

38
# Name Kegg Source Accession
1 Focal adhesion hsa04510
2 ECM-receptor interaction hsa04512

Pathways related to Hematuria, Benign Familial according to GeneCards Suite gene sharing:

(show all 22)
# Super pathways Score Top Affiliating Genes
1
Show member pathways
12.99 COL4A3 COL4A4 COL4A5
2
Show member pathways
12.91 COL4A3 COL4A4 COL4A5
3
Show member pathways
12.65 COL4A3 COL4A4 COL4A5
4
Show member pathways
12.63 COL4A3 COL4A4 COL4A5
5
Show member pathways
12.62 COL4A3 COL4A4 COL4A5
6
Show member pathways
12.58 COL4A3 COL4A4 COL4A5
7
Show member pathways
12.5 COL4A3 COL4A4 COL4A5
8 12.42 COL4A3 COL4A4 COL4A5
9
Show member pathways
12.41 COL4A3 COL4A4 COL4A5
10
Show member pathways
12.32 COL4A3 COL4A4 COL4A5
11
Show member pathways
12.21 COL4A3 COL4A4 COL4A5
12
Show member pathways
11.83 COL4A3 COL4A4 COL4A5
13
Show member pathways
11.82 COL4A3 COL4A4 COL4A5
14 11.61 COL4A3 COL4A4 COL4A5
15 11.56 COL4A3 COL4A4 COL4A5
16 11.51 COL4A3 COL4A4 COL4A5
17 11.37 COL4A3 COL4A4 COL4A5
18 11.22 COL4A3 COL4A4 COL4A5
19 11.02 COL4A3 COL4A4 COL4A5
20 10.73 COL4A3 COL4A4 COL4A5
21 10.62 COL4A3 COL4A4 COL4A5
22 10.37 COL4A3 COL4A4 COL4A5

GO Terms for Hematuria, Benign Familial

Cellular components related to Hematuria, Benign Familial according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 extracellular region GO:0005576 9.61 COL4A3 COL4A4 COL4A5
2 extracellular space GO:0005615 9.54 COL4A3 COL4A4 COL4A5
3 extracellular matrix GO:0031012 9.5 COL4A3 COL4A4 COL4A5
4 endoplasmic reticulum lumen GO:0005788 9.43 COL4A3 COL4A4 COL4A5
5 collagen-containing extracellular matrix GO:0062023 9.4 COL4A3 COL4A5
6 basement membrane GO:0005604 9.33 COL4A3 COL4A4 COL4A5
7 collagen trimer GO:0005581 9.13 COL4A3 COL4A4 COL4A5
8 collagen type IV trimer GO:0005587 8.8 COL4A3 COL4A4 COL4A5

Biological processes related to Hematuria, Benign Familial according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 extracellular matrix organization GO:0030198 9.33 COL4A3 COL4A4 COL4A5
2 collagen-activated tyrosine kinase receptor signaling pathway GO:0038063 8.96 COL4A3 COL4A5
3 glomerular basement membrane development GO:0032836 8.62 COL4A3 COL4A4

Molecular functions related to Hematuria, Benign Familial according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 extracellular matrix structural constituent conferring tensile strength GO:0030020 8.96 COL4A3 COL4A5
2 extracellular matrix structural constituent GO:0005201 8.8 COL4A3 COL4A4 COL4A5

Sources for Hematuria, Benign Familial

3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 EFO
18 ExPASy
20 FMA
29 GO
30 GTR
31 HGMD
32 HMDB
33 HPO
34 ICD10
35 ICD10 via Orphanet
36 ICD9CM
37 IUPHAR
38 KEGG
39 LifeMap
41 LOVD
43 MedGen
45 MeSH
46 MESH via Orphanet
47 MGI
50 NCI
51 NCIt
52 NDF-RT
55 NINDS
56 Novoseek
58 OMIM
59 OMIM via Orphanet
63 PubMed
65 QIAGEN
70 SNOMED-CT via HPO
71 SNOMED-CT via Orphanet
72 TGDB
73 Tocris
74 UMLS
75 UMLS via Orphanet
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