MCID: IMM178
MIFTS: 21

Immunodeficiency 31b

Categories: Genetic diseases, Blood diseases, Rare diseases, Immune diseases, Infectious diseases

Aliases & Classifications for Immunodeficiency 31b

MalaCards integrated aliases for Immunodeficiency 31b:

Name: Immunodeficiency 31b 57 75 73
Mycobacterial and Viral Infections, Susceptibility to, Autosomal Recessive 29 13 6
Immunodeficiency 31b, Mycobacterial and Viral Infections, Autosomal Recessive 57 75
Imd31b 57 75
Immunodeficiency, Type 31b, Mycobacterial and Viral Infections, Autosomal Recessive 40
Autosomal Recessive Susceptibility to Mycobacterial and Viral Infections 75
Mycobacterial and Viral Infections Due to Complete Stat1 Deficiency 75
Susceptibility to Viral and Mycobacterial Infections 59
Stat1 Deficiency, Autosomal Recessive 57
Autosomal Recessive Stat1 Deficiency 75
Stat1 Deficiency 59

Characteristics:

Orphanet epidemiological data:

59
susceptibility to viral and mycobacterial infections
Inheritance: Autosomal recessive;

OMIM:

57
Inheritance:
autosomal recessive

Miscellaneous:
onset in early childhood
may be fatal
patients may develop disseminated disease after bcg vaccination
patients may respond well to treatment with gamma-interferon


HPO:

32
immunodeficiency 31b:
Inheritance autosomal recessive inheritance


Classifications:

Orphanet: 59  
Rare immunological diseases


External Ids:

OMIM 57 613796
Orphanet 59 ORPHA391311
ICD10 via Orphanet 34 D84.8
MedGen 42 C3151088
MeSH 44 D007153
SNOMED-CT via HPO 69 258211005 428638009
UMLS 73 C3151088

Summaries for Immunodeficiency 31b

UniProtKB/Swiss-Prot : 75 Immunodeficiency 31B: A disorder characterized by susceptibility to severe mycobacterial and viral infections. Affected individuals can develop disseminated infections and die of viral illness.

MalaCards based summary : Immunodeficiency 31b, also known as mycobacterial and viral infections, susceptibility to, autosomal recessive, is related to immunodeficiency 31a. An important gene associated with Immunodeficiency 31b is STAT1 (Signal Transducer And Activator Of Transcription 1). Related phenotypes are recurrent mycobacterial infections and herpes simplex encephalitis

Description from OMIM: 613796

Related Diseases for Immunodeficiency 31b

Diseases related to Immunodeficiency 31b via text searches within MalaCards or GeneCards Suite gene sharing:

# Related Disease Score Top Affiliating Genes
1 immunodeficiency 31a 11.0

Symptoms & Phenotypes for Immunodeficiency 31b

Symptoms via clinical synopsis from OMIM:

57
Immunology:
increased susceptibility to mycobacterial infections
increased susceptibility to viral infections
poor il12, gamma-interferon, and tnf-alpha production
impaired response to alpha-, beta-, and gamma-interferon


Clinical features from OMIM:

613796

Human phenotypes related to Immunodeficiency 31b:

32
# Description HPO Frequency HPO Source Accession
1 recurrent mycobacterial infections 32 HP:0011274
2 herpes simplex encephalitis 32 HP:0012302

Drugs & Therapeutics for Immunodeficiency 31b

Search Clinical Trials , NIH Clinical Center for Immunodeficiency 31b

Genetic Tests for Immunodeficiency 31b

Genetic tests related to Immunodeficiency 31b:

# Genetic test Affiliating Genes
1 Mycobacterial and Viral Infections, Susceptibility to, Autosomal Recessive 29 STAT1

Anatomical Context for Immunodeficiency 31b

Publications for Immunodeficiency 31b

Articles related to Immunodeficiency 31b:

# Title Authors Year
1
Long-Term Survival After Hematopoietic Stem Cell Transplantation for Complete STAT1 Deficiency. ( 28815344 )
2017
2
Mycobacterium szulgai Chronic Multifocal Osteomyelitis in an Adolescent with Inherited STAT1 Deficiency. ( 24061272 )
2013
3
Mycobacterium szulgai chronic multifocal osteomyelitis in an adolescent with inherited STAT1 deficiency. ( 24569307 )
2013
4
A novel form of human STAT1 deficiency impairing early but not late responses to interferons. ( 20841510 )
2010
5
A partial form of recessive STAT1 deficiency in humans. ( 19436109 )
2009
6
Impaired response to interferon-alpha/beta and lethal viral disease in human STAT1 deficiency. ( 12590259 )
2003

Variations for Immunodeficiency 31b

UniProtKB/Swiss-Prot genetic disease variations for Immunodeficiency 31b:

75
# Symbol AA change Variation ID SNP ID
1 STAT1 p.Leu600Pro VAR_018265 rs137852678
2 STAT1 p.Lys201Asn VAR_065815 rs587776870
3 STAT1 p.Tyr701Cys VAR_075500

ClinVar genetic disease variations for Immunodeficiency 31b:

6
(show all 50)
# Gene Variation Type Significance SNP ID Assembly Location
1 STAT1 NM_007315.3(STAT1): c.1760_1761delAG (p.Glu587Alafs) deletion Pathogenic rs587776713 GRCh38 Chromosome 2, 190978968: 190978969
2 STAT1 NM_007315.3(STAT1): c.1760_1761delAG (p.Glu587Alafs) deletion Pathogenic rs587776713 GRCh37 Chromosome 2, 191843694: 191843695
3 STAT1 NM_007315.3(STAT1): c.1799T> C (p.Leu600Pro) single nucleotide variant Pathogenic rs137852678 GRCh37 Chromosome 2, 191843656: 191843656
4 STAT1 NM_007315.3(STAT1): c.1799T> C (p.Leu600Pro) single nucleotide variant Pathogenic rs137852678 GRCh38 Chromosome 2, 190978930: 190978930
5 STAT1 NM_007315.3(STAT1): c.1927dupA (p.Thr643Asnfs) duplication Pathogenic rs587776714 GRCh38 Chromosome 2, 190976972: 190976972
6 STAT1 NM_007315.3(STAT1): c.1927dupA (p.Thr643Asnfs) duplication Pathogenic rs587776714 GRCh37 Chromosome 2, 191841698: 191841698
7 STAT1 NM_007315.3(STAT1): c.603G> T (p.Lys201Asn) single nucleotide variant Pathogenic rs587776870 GRCh38 Chromosome 2, 190998247: 190998247
8 STAT1 NM_007315.3(STAT1): c.603G> T (p.Lys201Asn) single nucleotide variant Pathogenic rs587776870 GRCh37 Chromosome 2, 191862973: 191862973
9 STAT1 NM_007315.3(STAT1): c.88delA (p.Ile30Serfs) deletion Pathogenic rs886043118 GRCh37 Chromosome 2, 191874642: 191874642
10 STAT1 NM_007315.3(STAT1): c.88delA (p.Ile30Serfs) deletion Pathogenic rs886043118 GRCh38 Chromosome 2, 191009916: 191009916
11 STAT1 NM_007315.3(STAT1): c.1097+10C> G single nucleotide variant Benign/Likely benign rs41488044 GRCh37 Chromosome 2, 191854331: 191854331
12 STAT1 NM_007315.3(STAT1): c.1097+10C> G single nucleotide variant Benign/Likely benign rs41488044 GRCh38 Chromosome 2, 190989605: 190989605
13 STAT1 NM_007315.3(STAT1): c.633+6T> A single nucleotide variant Benign/Likely benign rs45459703 GRCh37 Chromosome 2, 191862937: 191862937
14 STAT1 NM_007315.3(STAT1): c.633+6T> A single nucleotide variant Benign/Likely benign rs45459703 GRCh38 Chromosome 2, 190998211: 190998211
15 STAT1 NM_007315.3(STAT1): c.1155G> A (p.Thr385=) single nucleotide variant Benign/Likely benign rs41270237 GRCh38 Chromosome 2, 190986920: 190986920
16 STAT1 NM_007315.3(STAT1): c.1155G> A (p.Thr385=) single nucleotide variant Benign/Likely benign rs41270237 GRCh37 Chromosome 2, 191851646: 191851646
17 STAT1 NM_007315.3(STAT1): c.796G> A (p.Val266Ile) single nucleotide variant Likely benign rs41473544 GRCh37 Chromosome 2, 191859935: 191859935
18 STAT1 NM_007315.3(STAT1): c.796G> A (p.Val266Ile) single nucleotide variant Likely benign rs41473544 GRCh38 Chromosome 2, 190995209: 190995209
19 STAT1 NM_007315.3(STAT1): c.1866C> T (p.Asn622=) single nucleotide variant Likely benign rs112108750 GRCh38 Chromosome 2, 190978863: 190978863
20 STAT1 NM_007315.3(STAT1): c.1866C> T (p.Asn622=) single nucleotide variant Likely benign rs112108750 GRCh37 Chromosome 2, 191843589: 191843589
21 STAT1 NM_007315.3(STAT1): c.1263+7G> A single nucleotide variant Likely benign rs56228116 GRCh38 Chromosome 2, 190985612: 190985612
22 STAT1 NM_007315.3(STAT1): c.1263+7G> A single nucleotide variant Likely benign rs56228116 GRCh37 Chromosome 2, 191850338: 191850338
23 STAT1 NM_007315.3(STAT1): c.1116T> C (p.Asn372=) single nucleotide variant Benign/Likely benign rs55891000 GRCh37 Chromosome 2, 191851776: 191851776
24 STAT1 NM_007315.3(STAT1): c.1116T> C (p.Asn372=) single nucleotide variant Benign/Likely benign rs55891000 GRCh38 Chromosome 2, 190987050: 190987050
25 STAT1 NM_007315.3(STAT1): c.990G> A (p.Gln330=) single nucleotide variant Benign/Likely benign rs41509946 GRCh37 Chromosome 2, 191856001: 191856001
26 STAT1 NM_007315.3(STAT1): c.990G> A (p.Gln330=) single nucleotide variant Benign/Likely benign rs41509946 GRCh38 Chromosome 2, 190991275: 190991275
27 STAT1 NM_007315.3(STAT1): c.2136T> G (p.Val712=) single nucleotide variant Benign rs35364817 GRCh38 Chromosome 2, 190974932: 190974932
28 STAT1 NM_007315.3(STAT1): c.2136T> G (p.Val712=) single nucleotide variant Benign rs35364817 GRCh37 Chromosome 2, 191839658: 191839658
29 STAT1 NM_007315.3(STAT1): c.870A> G (p.Glu290=) single nucleotide variant Likely benign rs767586956 GRCh38 Chromosome 2, 190995135: 190995135
30 STAT1 NM_007315.3(STAT1): c.870A> G (p.Glu290=) single nucleotide variant Likely benign rs767586956 GRCh37 Chromosome 2, 191859861: 191859861
31 STAT1 NM_007315.3(STAT1): c.2019A> G (p.Lys673=) single nucleotide variant Benign rs35098579 GRCh37 Chromosome 2, 191841606: 191841606
32 STAT1 NM_007315.3(STAT1): c.2019A> G (p.Lys673=) single nucleotide variant Benign rs35098579 GRCh38 Chromosome 2, 190976880: 190976880
33 STAT1 NM_007315.3(STAT1): c.1127+4C> T single nucleotide variant Uncertain significance rs372508550 GRCh38 Chromosome 2, 190987035: 190987035
34 STAT1 NM_007315.3(STAT1): c.1127+4C> T single nucleotide variant Uncertain significance rs372508550 GRCh37 Chromosome 2, 191851761: 191851761
35 STAT1 NM_007315.3(STAT1): c.1257G> A (p.Thr419=) single nucleotide variant Benign rs73979321 GRCh37 Chromosome 2, 191850351: 191850351
36 STAT1 NM_007315.3(STAT1): c.1257G> A (p.Thr419=) single nucleotide variant Benign rs73979321 GRCh38 Chromosome 2, 190985625: 190985625
37 STAT1 NM_007315.3(STAT1): c.463-8G> C single nucleotide variant Benign rs2066794 GRCh37 Chromosome 2, 191864438: 191864438
38 STAT1 NM_007315.3(STAT1): c.463-8G> C single nucleotide variant Benign rs2066794 GRCh38 Chromosome 2, 190999712: 190999712
39 STAT1 NM_007315.3(STAT1): c.1098-5dup duplication Benign GRCh38 Chromosome 2, 190987073: 190987073
40 STAT1 NM_007315.3(STAT1): c.1098-5dup duplication Benign GRCh37 Chromosome 2, 191851799: 191851799
41 STAT1 NM_007315.3(STAT1): c.866A> G (p.Tyr289Cys) single nucleotide variant Likely pathogenic GRCh38 Chromosome 2, 190995139: 190995139
42 STAT1 NM_007315.3(STAT1): c.866A> G (p.Tyr289Cys) single nucleotide variant Likely pathogenic GRCh37 Chromosome 2, 191859865: 191859865
43 STAT1 NM_007315.3(STAT1): c.1059G> A (p.Glu353=) single nucleotide variant Likely benign rs371279547 GRCh37 Chromosome 2, 191854379: 191854379
44 STAT1 NM_007315.3(STAT1): c.1059G> A (p.Glu353=) single nucleotide variant Likely benign rs371279547 GRCh38 Chromosome 2, 190989653: 190989653
45 STAT1 NM_007315.3(STAT1): c.825G> A (p.Gln275=) single nucleotide variant Likely benign rs61756197 GRCh38 Chromosome 2, 190995180: 190995180
46 STAT1 NM_007315.3(STAT1): c.825G> A (p.Gln275=) single nucleotide variant Likely benign rs61756197 GRCh37 Chromosome 2, 191859906: 191859906
47 STAT1 NM_007315.3(STAT1): c.1371G> A (p.Val457=) single nucleotide variant Likely benign rs144704615 GRCh38 Chromosome 2, 190983717: 190983717
48 STAT1 NM_007315.3(STAT1): c.1371G> A (p.Val457=) single nucleotide variant Likely benign rs144704615 GRCh37 Chromosome 2, 191848443: 191848443
49 STAT1 NM_007315.3(STAT1): c.793A> G (p.Ile265Val) single nucleotide variant Benign rs148775168 GRCh38 Chromosome 2, 190995212: 190995212
50 STAT1 NM_007315.3(STAT1): c.793A> G (p.Ile265Val) single nucleotide variant Benign rs148775168 GRCh37 Chromosome 2, 191859938: 191859938

Expression for Immunodeficiency 31b

Search GEO for disease gene expression data for Immunodeficiency 31b.

Pathways for Immunodeficiency 31b

GO Terms for Immunodeficiency 31b

Sources for Immunodeficiency 31b

3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 ExPASy
19 FMA
28 GO
29 GTR
30 HGMD
31 HMDB
32 HPO
33 ICD10
34 ICD10 via Orphanet
35 ICD9CM
36 IUPHAR
37 KEGG
38 LifeMap
40 LOVD
42 MedGen
44 MeSH
45 MESH via Orphanet
46 MGI
49 NCI
50 NCIt
51 NDF-RT
54 NINDS
55 Novoseek
57 OMIM
58 OMIM via Orphanet
62 PubMed
64 QIAGEN
69 SNOMED-CT via HPO
70 SNOMED-CT via Orphanet
71 TGDB
72 Tocris
73 UMLS
74 UMLS via Orphanet
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