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ICF1
MCID: IMM072
MIFTS: 59

Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 (ICF1)

Categories: Genetic diseases, Immune diseases, Rare diseases
Genes Variations Tissues Related diseases Publications Pathways Symptoms & Phenotypes Drugs
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Aliases & Classifications for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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MalaCards integrated aliases for Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

Name: Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 57 12 74 13
Immunodeficiency Syndrome, Variable 57 72
Chromosomal Instability 44 72
Icf Syndrome 74 55
Icf1 57 74
Ciid 57 74
Immune Deficiency, Variable, with Centromeric Instability of Chromosomes 1, 9, and 16 57
Variable Immune Deficiency with Centromeric Instability of Chromosomes 1 9 and 16 74
Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome, Type 1 40
Centromeric Instability, Immunodeficiency Syndrome; Ciid 57
Centromeric Instability, Immunodeficiency Syndrome 57
Centromeric Instability Immunodeficiency Syndrome 74
Variable Immunodeficiency Syndrome 74
Common Variable Immunodeficiency 72
Icf Syndrome 1 12

Characteristics:

OMIM:

57
Inheritance:
autosomal recessive

Miscellaneous:
centromeric instability of chromosomes 1, 9 and 16 with increased somatic recombination and formation of multibranched configurations


HPO:

32
immunodeficiency-centromeric instability-facial anomalies syndrome 1:
Inheritance autosomal recessive inheritance


Classifications:

MalaCards categories:
Global: Genetic diseases Rare diseases
Anatomical: Immune diseases
See all MalaCards categories (disease lists)
ICD10: 33


External Ids:

Disease Ontology 12 DOID:0090008
ICD10 33 D84.8
UMLS 72 C0009447 C0398788 C1257806
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Summaries for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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OMIM : 57 Immunodeficiency, centromeric instability, and facial dysmorphism (ICF) syndrome is a rare autosomal recessive disease characterized by facial dysmorphism, immunoglobulin deficiency, and branching of chromosomes 1, 9, and 16 after phytohemagglutinin (PHA) stimulation of lymphocytes. Hypomethylation of DNA of a small fraction of the genome is an unusual feature of ICF patients that is explained by mutations in the DNMT3B gene in some, but not all, ICF patients (Hagleitner et al., 2008). (242860)

MalaCards based summary : Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1, also known as immunodeficiency syndrome, variable, is related to immunodeficiency-centromeric instability-facial anomalies syndrome and mutagen sensitivity, and has symptoms including diarrhea An important gene associated with Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 is DNMT3B (DNA Methyltransferase 3 Beta), and among its related pathways/superpathways are Chromatin Regulation / Acetylation and Primary immunodeficiency. The drugs Clonidine and Mecasermin have been mentioned in the context of this disorder. Affiliated tissues include lung, t cells and liver, and related phenotypes are recurrent respiratory infections and short stature

Disease Ontology : 12 An immunodeficiency-centromeric instability-facial anomalies syndrome characterized by autosomal recessive inheritance, facial dysmorphism and immunoglobulin deficiency of lymphocytes that has material basis in homozygous or compound heterozygous mutation in the DNMT3B gene on chromosome 20q11.2.

UniProtKB/Swiss-Prot : 74 Immunodeficiency-centromeric instability-facial anomalies syndrome 1: A rare disorder characterized by a variable immunodeficiency resulting in recurrent infections, facial anomalies, and branching of chromosomes 1, 9, and 16. Other variable symptoms include growth retardation, failure to thrive, and psychomotor retardation. Laboratory studies show limited hypomethylation of DNA in a small fraction of the genome in some, but not all, patients.

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Related Diseases for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Diseases related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 via text searches within MalaCards or GeneCards Suite gene sharing:

(show top 50) (show all 449)
# Related Disease Score Top Affiliating Genes
1 immunodeficiency-centromeric instability-facial anomalies syndrome 32.8 VAMP7 DNMT3B DNMT1
2 mutagen sensitivity 30.1 DNMT3B DNMT1
3 immunoglobulin alpha deficiency 29.3 CD79A CD40LG
4 immunoglobulin g deficiency 29.3 CD79A CD40LG
5 cryptosporidiosis 29.1 CD79A CD40LG
6 agammaglobulinemia, x-linked 28.9 CD79A CD40LG
7 marginal zone b-cell lymphoma 28.8 CD79A CD40LG
8 immune deficiency disease 28.6 CD79A CD40LG
9 tetanus 28.6 VAMP7 CD79A CD40LG
10 meningoencephalitis 28.3 MECP2 CD79A CD40LG
11 radiation sensitivity/chromosome instability syndrome, autosomal dominant 12.5
12 chromosomal instability with tissue-specific radiosensitivity 12.3
13 nijmegen breakage syndrome 12.2
14 nijmegen breakage syndrome-like disorder 12.1
15 bloom syndrome 12.1
16 colorectal cancer 11.6
17 coffin-lowry syndrome 11.6
18 fanconi anemia, complementation group a 11.5
19 fanconi anemia, complementation group c 11.4
20 fanconi anemia, complementation group d2 11.4
21 down syndrome 11.4
22 fanconi anemia, complementation group d1 11.4
23 immunodeficiency, common variable, 10 11.3
24 fanconi anemia, complementation group p 11.3
25 immunodeficiency-centromeric instability-facial anomalies syndrome 2 11.2
26 immunodeficiency-centromeric instability-facial anomalies syndrome 3 11.2
27 immunodeficiency-centromeric instability-facial anomalies syndrome 4 11.2
28 fanconi anemia, complementation group b 11.0
29 fanconi anemia, complementation group e 11.0
30 fanconi anemia, complementation group f 11.0
31 fanconi anemia, complementation group i 11.0
32 fanconi anemia, complementation group j 11.0
33 fanconi anemia, complementation group n 11.0
34 fanconi anemia, complementation group o 11.0
35 fanconi anemia, complementation group g 11.0
36 fanconi anemia, complementation group l 11.0
37 fanconi anemia, complementation group q 11.0
38 fanconi anemia, complementation group t 11.0
39 fanconi anemia, complementation group v 11.0
40 fanconi anemia, complementation group r 11.0
41 fanconi anemia, complementation group u 11.0
42 fanconi anemia, complementation group w 11.0
43 fanconi anemia, complementation group s 11.0
44 ataxia and polyneuropathy, adult-onset 10.5
45 autosomal recessive disease 10.5
46 agammaglobulinemia 10.3
47 polyploidy 10.3
48 microcephaly 10.3
49 breast cancer 10.3
50 adenoma 10.3

Comorbidity relations with Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 via Phenotypic Disease Network (PDN):


Agammaglobulinemia, X-Linked Bronchitis
Deficiency Anemia Leukemia, Chronic Lymphocytic
Neutropenia

Graphical network of the top 20 diseases related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:



Diseases related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1
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Symptoms & Phenotypes for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Human phenotypes related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

32 (show all 36)
# Description HPO Frequency HPO Source Accession
1 recurrent respiratory infections 32 hallmark (90%) HP:0002205
2 short stature 32 hallmark (90%) HP:0004322
3 micrognathia 32 hallmark (90%) HP:0000347
4 decreased antibody level in blood 32 hallmark (90%) HP:0004313
5 abnormality of chromosome stability 32 hallmark (90%) HP:0003220
6 macrocephaly 32 frequent (33%) HP:0000256
7 intellectual disability 32 frequent (33%) HP:0001249
8 global developmental delay 32 frequent (33%) HP:0001263
9 depressed nasal bridge 32 frequent (33%) HP:0005280
10 malabsorption 32 frequent (33%) HP:0002024
11 anemia 32 frequent (33%) HP:0001903
12 lymphopenia 32 frequent (33%) HP:0001888
13 cellular immunodeficiency 32 frequent (33%) HP:0005374
14 abnormality of neutrophils 32 frequent (33%) HP:0001874
15 communicating hydrocephalus 32 frequent (33%) HP:0001334
16 hypertelorism 32 occasional (7.5%) HP:0000316
17 low-set ears 32 occasional (7.5%) HP:0000369
18 macroglossia 32 occasional (7.5%) HP:0000158
19 umbilical hernia 32 occasional (7.5%) HP:0001537
20 epicanthus 32 occasional (7.5%) HP:0000286
21 flat face 32 occasional (7.5%) HP:0012368
22 protruding tongue 32 occasional (7.5%) HP:0010808
23 malar flattening 32 HP:0000272
24 failure to thrive 32 HP:0001508
25 short nose 32 HP:0003196
26 anteverted nares 32 HP:0000463
27 immunodeficiency 32 HP:0002721
28 sinusitis 32 HP:0000246
29 diarrhea 32 HP:0002014
30 pneumonia 32 HP:0002090
31 reduced natural killer cell count 32 HP:0040218
32 decreased circulating iga level 32 HP:0002720
33 decrease in t cell count 32 HP:0005403
34 bronchiectasis 32 HP:0002110
35 chronic bronchitis 32 HP:0004469
36 increased circulating igm level 32 HP:0003496

Symptoms via clinical synopsis from OMIM:

57
Head And Neck Face:
hypertelorism
flat face
epicanthal folds

Head And Neck Mouth:
macroglossia
micrognathia
tongue protrusion

Head And Neck Head:
sinusitis

Respiratory Airways:
bronchiectasis
chronic bronchitis

Laboratory Abnormalities:
increased igm
reduced iga

Growth Weight:
below the third percentile

Neurologic Central Nervous System:
variable mental retardation ranging from severe neurodegeneration to mild mental retardation

Growth Other:
failure to thrive
head circumference below the third percentile

Abdomen Gastrointestinal:
malabsorption
diarrhea

Respiratory Lung:
pneumonia

Head And Neck Nose:
flat nasal bridge
small upturned nose

Growth Height:
below the third percentile

Head And Neck Ears:
low set ears

Immunology:
reduced number of t cells
reduced number of natural killer cells

Clinical features from OMIM:

242860

UMLS symptoms related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:


diarrhea

MGI Mouse Phenotypes related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

46
# Description MGI Source Accession Score Top Affiliating Genes
1 cellular MP:0005384 9.73 CD40LG CD79A DNMT1 DNMT3B MECP2 VAMP7
2 immune system MP:0005387 9.63 CBX5 CD40LG CD79A DNMT1 DNMT3B MECP2
3 nervous system MP:0003631 9.43 CD40LG CD79A DNMT1 DNMT3B MECP2 VAMP7
4 no phenotypic analysis MP:0003012 8.92 CD79A DNMT1 DNMT3B MECP2
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Drugs & Therapeutics for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Drugs for Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 (from DrugBank, HMDB, Dgidb, PharmGKB, IUPHAR, NovoSeek, BitterDB):

(show top 50) (show all 109)
# Name Status Phase Clinical Trials Cas Number PubChem Id
1
Clonidine Approved Phase 4 4205-90-7 2803
2
Mecasermin Approved, Investigational Phase 4 68562-41-4
3
Estradiol Approved, Investigational, Vet_approved Phase 4 50-28-2 5757
4
Polyestradiol phosphate Approved Phase 4 28014-46-2
5
Rifaximin Approved, Investigational Phase 4 80621-81-4 46783403 6436173
6 Analgesics Phase 4
7 Peripheral Nervous System Agents Phase 4
8 insulin Phase 4
9 Insulin, Globin Zinc Phase 4
10 Hormones Phase 4
11 Hormone Antagonists Phase 4
12 Autonomic Agents Phase 4
13 Hormones, Hormone Substitutes, and Hormone Antagonists Phase 4
14 Neurotransmitter Agents Phase 4
15 Antihypertensive Agents Phase 4
16 Estrogens Phase 4
17 Adrenergic alpha-2 Receptor Agonists Phase 4
18 Contraceptive Agents Phase 4
19 Adrenergic Agonists Phase 4
20 Mitogens Phase 4
21 Adrenergic alpha-Agonists Phase 4
22 Adrenergic Agents Phase 4
23 Estradiol 17 beta-cypionate Phase 4
24 Sympatholytics Phase 4
25 arginine Phase 4
26 Estradiol 3-benzoate Phase 4
27 Anti-Bacterial Agents Phase 4
28 Complement C1s Phase 4
29 Complement C1 Inhibitor Protein Phase 4
30 Complement C1 Inactivator Proteins Phase 4
31 Complement Inactivating Agents Phase 4
32 Immunologic Factors Phase 4
33 Antibodies Phase 4
34 Immunoglobulins Phase 4
35 Immunoglobulin G Phase 4
36 Pharmaceutical Solutions Phase 4
37 gamma-Globulins Phase 3
38 Immunoglobulins, Intravenous Phase 3
39 Rho(D) Immune Globulin Phase 3
40
Peginterferon alfa-2a Approved, Investigational Phase 2 198153-51-4 5360545
41
Mesna Approved, Investigational Phase 2 3375-50-6 598
42
Fludarabine Approved Phase 1, Phase 2 21679-14-1, 75607-67-9 30751
43
alemtuzumab Approved, Investigational Phase 2 216503-57-0
44
Cyclophosphamide Approved, Investigational Phase 2 50-18-0, 6055-19-2 2907
45
Melphalan Approved Phase 2 148-82-3 460612 4053
46
Busulfan Approved, Investigational Phase 2 55-98-1 2478
47
Thiotepa Approved, Investigational Phase 1, Phase 2 52-24-4 5453
48
Prednisone Approved, Vet_approved Phase 2 53-03-2 5865
49
Pentostatin Approved, Investigational Phase 2 53910-25-1 40926 439693
50
Sirolimus Approved, Investigational Phase 2 53123-88-9 6436030 5284616 46835353

Interventional clinical trials:

(show top 50) (show all 66)
# Name Status NCT ID Phase Drugs
1 Status of the Growth Hormone/ Insulin-like Growth Factor-1 (GH/IGF-1) Axis in Relation to Growth Failure, Body Weight and Neuroprotection in Children With Ataxia Telangiectasia Unknown status NCT01052623 Phase 4 Somatropin, Clonidine, L-Arginin-Hydrochloride, Estradiol valerate
2 A Phase IV, Multicenter, Open-Label Study to Evaluate the Efficacy, Safety and Pharmacokinetics of Gammaplex in Primary Immunodeficiency Diseases (PID) in Children and Adolescents Completed NCT01289847 Phase 4
3 Effects of Rifaximin, by Modulation of the Gut Microbiota, on Markers of Systemic Inflammation in Patients With Common Variable Immunodeficiency - An Exploratory Open-label Randomized Controlled Trial Completed NCT01946906 Phase 4 Rifaximin
4 A Multicenter Study on the Efficacy and Safety of Vivaglobin® in Previously Untreated Patients (PUPs) With Primary Immunodeficiency (PID) Completed NCT00520494 Phase 4 Vivaglobin
5 A Single-site, Open-Label, Pilot Study to Evaluate the Benefit of RUCONEST® in Subjects Who Experience ADRs Related to IVIG Infusions Recruiting NCT03576469 Phase 4
6 Immunoglobulin Replacement Therapy for Immunoglobulin G Subclass 2 Deficient Patients With Bronchiectasis- A Proof of Concept Study Not yet recruiting NCT03737617 Phase 4 Cuvitru 20 % Injectable Solution
7 IGIV-C 10% Rapid Infusion Trial in Primary Immune Deficient Patients Completed NCT00220766 Phase 3 Immune Globulin Intravenous [Human], 10% Caprylate/Chromatography Purified;Dextrose, 5% in Water
8 A Multicenter Study on the Efficacy, Safety and Pharmacokinetics of IgPro10 in Patients With Primary Immunodeficiency (PID) Completed NCT00168025 Phase 3 Immunoglobulins Intravenous (Human)
9 An Open Study to Evaluate the Safety and Efficacy of IVIG-F10 in Patients With Primary Immunodeficiency Diseases (PID) Completed NCT00168012 Phase 3 Immunoglobulins Intravenous (Human)
10 A Multicenter Extension Study on the Safety and Efficacy of IgPro10 in Patients With Primary Immunodeficiency (PID) Completed NCT00322556 Phase 3 Immunoglobulins Intravenous (Human)
11 A Multi-centre Open Study to Assess the Safety and Efficacy of Subgam® Given Via the Subcutaneous Route in Primary Antibody Deficient Patients. Completed NCT02247141 Phase 3
12 A Multicentre Study of the Efficacy, Tolerability, Safety, and Pharmacokinetics of Immune Globulin Subcutaneous (Human) IgPro20 in Subjects With Primary Immunodeficiency Completed NCT00542997 Phase 3
13 A Phase III, Multicenter, Open-Label Study to Evaluate the Pharmacokinetics and Safety of Subgam-VF in Primary Immunodeficiency Diseases Completed NCT01884311 Phase 3
14 A Phase III, Multicenter, Open-label, Randomized, Two-Period, Crossover Bioequivalence Study to Evaluate the Pharmacokinetics, Safety, and Tolerability of Gammaplex® 10 and Gammaplex® 5% in Primary Immunodeficiency Diseases Completed NCT01963143 Phase 3
15 A Phase III, Multicenter, Open-Label Study To Evaluate The Efficacy, Safety, and Pharmacokinetics of Gammaplex® in Primary Immunodeficiency Diseases Completed NCT00278954 Phase 3
16 An Open-label, Non-randomized, Within-patient Dose-finding Study Followed by a Randomized, Subject, Investigator and Sponsor-blinded Placebo Controlled Study to Assess the Efficacy and Safety of CDZ173 in Patients With APDS/PASLI Recruiting NCT02435173 Phase 2, Phase 3 CDZ173
17 Clinical and Virological Efficacy of Pegylated Interferon Alpha in the Treatment of Rhinovirus Infection in Patients With Primary Hypogammaglobulinemia: Randomized Controlled Trial Unknown status NCT02661477 Phase 2 pegylated interferon alfa 2
18 PEDS024, Phase I/II Feasibility Study of Busulfan Fludarabine and Thiotepa Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation (HSCT) for Children With Non-Malignant Disorders Recruiting NCT03513328 Phase 1, Phase 2 Thiotepa--single daily dose;Thiotepa--escalated dose
19 A Study of Hematopoietic Stem Cell Transplantation (HSCT) in Immune Function Disorders Using a Reduced Intensity Preparatory Regime Recruiting NCT01821781 Phase 2 Transplant preparative regimen of alemtuzumab, fludarabine, thiotepa, and melphalan
20 Pilot Trial of Allogeneic Blood or Marrow Transplantation for Primary Immunodeficiencies Recruiting NCT02579967 Phase 2 Immunosuppression Only Conditioning - Closed with amendment L;Reduced Intensity Conditioning;Myeloablative Conditioning-Closed with amendment L;GVHD Prophylaxis
21 Phase II Trial of Allogeneic Hematopoietic Cell Transplantation for Disorders of T-cell Proliferation and/or Dysregulation Recruiting NCT03663933 Phase 2 Immunosuppression Only Conditioning (IOC);Reduced Intensity Conditioning (RIC);GVHD Prophylaxis
22 An Open-Label Phase I/II Pilot Study to Assess the Safety/Tolerability and Efficacy of Ustekinumab for Symptomatic Gastrointestinal Inflammation Associated With Common Variable Immunodeficiency Active, not recruiting NCT02199496 Phase 1, Phase 2
23 Bilateral Orthotopic Lung Transplant in Tandem With CD3+ and CD19+ Cell Depleted Bone Marrow Transplant From Partially HLA-Matched Cadaveric Donors Enrolling by invitation NCT01852370 Phase 1, Phase 2
24 Randomised, Multicentric, Phase ii Study of the Immunogenicity of a "Prime Boost" Vaccination Strategy Combining Conjugated Anti- Pneumococcal Vaccine (s0) and Polysaccharide Anti- Pneumococcal Vaccine (s4) Compared to Polysaccharide Anti- Pneumococcal Vaccine Alone (s4) In Patients With Common Variable Immunodeficiency Terminated NCT01489618 Phase 2
25 Clinical Trial to Assess the Efficacy of Rituximab and Azathioprine in the Treatment of Granulomatous and Lymphocytic Interstitial Lung Disease (GLILD) in Adult Patients With Common Variable Immunodeficiency (CVID) Withdrawn NCT02789397 Phase 2 Rituximab (RTX) and Azathioprine (AZA);Placebo Administration
26 Single-Arm, Phase II Proof of Concept Study of IDO-1 Inhibitor Epacadostat in Combination With Pembrolizumab in Advanced Pancreatic Cancer With Chromosomal Instability/Homologous Recombination Repair Deficiency (HRD) Withdrawn NCT03432676 Phase 2 Epacadostat
27 Relative Bioavailability of Batch 1 and Batch 2 of the Intended Commercial Formulation of BI 425809 Compared to Each Other and to TF 2 Formulation of BI 425809 Following Oral Administration in Healthy Male and Female Subjects (Randomized, Open-label, Single-dose, Three-treatment, Three-period, Six-sequence Crossover Study) Completed NCT03817476 Phase 1 BI 425809 (Treatment T1);BI 425809 (Treatment T2);BI 425809 (Treatment R)
28 A Pilot Study of Safety and Efficacy of the Oral IL-12/23 Inhibitor, STA-5326 Mesylate, for Symptomatic Gastrointestinal Inflammation Associated With Common Variable Immunodeficiency Completed NCT00263237 Phase 1 STA-5326
29 Investigation of the Lymphocyte Surface Expression of Patients With Primary Immunodeficiency (Common Variable Immunodeficiency (CVID)), Compared to Controls Unknown status NCT01196702
30 Clinical and Molecular Characterization of Familial Microsatellite Stable Colorectal Cancer Unknown status NCT00220246
31 Analysis of Transposon Control Pathways in Germinal Cancers of the Testicle Unknown status NCT02873793
32 Investigation of Molecular, Genetic and Cellular Mechanisms of Human Immune Disorders and Deficiencies Unknown status NCT01981785
33 Oxidative Stress, Low Grade Inflammation, Tissue Breakdown and Biomarkers in Cerebrospinal Fluid of Patients With Ataxia Telangiectasia Unknown status NCT02285348
34 Genome-wide Single Cell Haplotyping as a Generic Method for Preimplantation Genetic Diagnosis Unknown status NCT01336400
35 Improving the Diagnosis of CVID by Analysis of Innate and Adaptive Signaling Pathways Unknown status NCT02680652
36 Randomized Study of Polyethylene-Glycol-Conjugated Interleukin 2 in Patients With Common Variable Immunodeficiency Completed NCT00004695 PEG-interleukin-2
37 The Immune Basis for the Gastrointestinal Complications of Common Variable Immunodeficiency Completed NCT00015431
38 Effects of Intravenous Human Polyclonal Immunoglobulins G Infusion on Endothelial Function and Insulin Sensitivity in Humans Completed NCT03534479 Polyclonal IgG
39 Gammaglobulins Level is Predictive Factor of Evolution in Sarcoidosis Completed NCT03259282
40 Serum IgG Antibody to Streptococcus Pneumoniae, Haemophilus Influenzae Type b and Tetanus Toxoid in Patients With Primary Antibody Deficiencies Treated With Subcutaneous Immunoglobulin Infusions Completed NCT00661401
41 Body Composition, Muscle Strength and Hormonal Status in Patients With Ataxia Telangiectasia Compared to Healthy Controls Completed NCT02345200
42 The Impact of Exercise on Stress, Fatigue, and Quality of Life in Individuals With Primary Immunodeficiency Disease Completed NCT03211689
43 Construction and Validation of a Health-related Quality of Life (HR-QOL) Instrument for Patients With Primary Antibody Deficiency Disease Completed NCT02542228
44 Prognostic Impact of the Endocytic Receptor LRP-1 Gene Promoter Methylation in a Retrospective Study of Colonic Adenocarcinomas Completed NCT02786602
45 Microsatellite Instability in Anal Squamous Cell Carcinomas of HIV-Positive Versus HIV-Negative Patients Completed NCT00952874
46 Νew Molecular Biomarkers for the Prevention and Early Detection of Precancerous or Cancerous Colorectal Lesions During Screening for Colorectal Cancer Completed NCT02596113
47 Allogeneic Hematopoietic Stem Cell Transplant for Patients With Primary Immune Deficiencies Recruiting NCT01652092 Alemtuzumab 0.3 mg;Cyclophosphamide;Busulfan;Fludarabine phosphate 40 mg;Melphalan;Alemtuzumab 0.2 mg;Busulfan;Fludarabine phosphate 30 mg;MESNA
48 Granulomatous-Lymphocytic Interstitial Lung Disease (GLILD) Diagnosed in Children and Young Adults With Common Variable Immunodeficiency Recruiting NCT03648567
49 Phenotype-genotype Correlation in a Sub-population of Severe Primary Immunodeficiency With Lymphoproliferation and Neutropenia Recruiting NCT03427593
50 Neoadjuvant Weekly Paclitaxel and Biomarkers of Therapy Response Recruiting NCT03096418 Paclitaxel

Search NIH Clinical Center for Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1

Cochrane evidence based reviews: chromosomal instability

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Genetic Tests for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Anatomical Context for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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MalaCards organs/tissues related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

41
Lung, T Cells, Liver, Bone, Tongue, Bone Marrow, Colon
Sources

Publications for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Articles related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

(show top 50) (show all 78)
# Title Authors PMID Year
1
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. 9 8 71
10555141 1999
2
Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene. 8 71
10647011 1999
3
Heterogeneous clinical presentation in ICF syndrome: correlation with underlying gene defects. 38 8
23486536 2013
4
DNA methyltransferase 3B (DNMT3B) mutations in ICF syndrome lead to altered epigenetic modifications and aberrant expression of genes regulating development, neurogenesis and immune function. 9 8
18029387 2008
5
DNMT3B mutations and DNA methylation defect define two types of ICF syndrome. 9 8
15580563 2005
6
ICF syndrome in a girl with DNA hypomethylation but without detectable DNMT3B mutation. 9 8
15326630 2004
7
X inactivation-specific methylation of LINE-1 elements by DNMT3B: implications for the Lyon repeat hypothesis. 9 71
12925568 2003
8
Three novel DNMT3B mutations in Japanese patients with ICF syndrome. 9 71
12239717 2002
9
Defective de novo methylation of viral and cellular DNA sequences in ICF syndrome cells. 9 8
12189161 2002
10
DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes. 9 8
11741835 2001
11
Mutations in CDCA7 and HELLS cause immunodeficiency-centromeric instability-facial anomalies syndrome. 8
26216346 2015
12
Clinical spectrum of immunodeficiency, centromeric instability and facial dysmorphism (ICF syndrome). 8
17893117 2008
13
ICF syndrome: high variability of the chromosomal phenotype and association with classical Hodgkin lymphoma. 8
17702009 2007
14
A new and a reclassified ICF patient without mutations in DNMT3B and its interacting proteins SUMO-1 and UBC9. 8
15952214 2005
15
Perturbations of chromatin structure in human genetic disease: recent advances. 8
12915455 2003
16
Human diseases with underlying defects in chromatin structure and modification. 8
11673406 2001
17
The ICF syndrome: new case and update. 8
11837609 2001
18
Genetic variation in ICF syndrome: evidence for genetic heterogeneity. 8
11102980 2000
19
Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant. 8
11063717 2000
20
Whole-genome methylation scan in ICF syndrome: hypomethylation of non-satellite DNA repeats D4Z4 and NBL2. 8
10699183 2000
21
A FISH study of chromosome fusion in the ICF syndrome: involvement of paracentric heterochromatin but not of the centromeres themselves. 8
9783707 1998
22
Localization of the ICF syndrome to chromosome 20 by homozygosity mapping. 8
9718351 1998
23
alpha-satellite DNA methylation in normal individuals and in ICF patients: heterogeneous methylation of constitutive heterochromatin in adult and fetal tissues. 8
9187666 1997
24
Demethylation of repetitive DNA sequences in neuroblastoma. 8
8946205 1996
25
Variability of clinical and immunological phenotype in immunodeficiency-centromeric instability-facial anomalies syndrome. Report of two new patients and review of the literature. 8
8529685 1995
26
ICF syndrome (immunodeficiency, centromeric instability and facial anomalies): investigation of heterochromatin abnormalities and review of clinical outcome. 8
7557962 1995
27
FISH analysis on spontaneously arising micronuclei in the ICF syndrome. 8
7562960 1995
28
Chromosome instability in ICF syndrome: formation of micronuclei from multibranched chromosomes 1 demonstrated by fluorescence in situ hybridization. 8
7625446 1995
29
ICF syndrome: a new case and review of the literature. 8
8076938 1994
30
An embryonic-like methylation pattern of classical satellite DNA is observed in ICF syndrome. 8
8102570 1993
31
ICF syndrome with variable expression in sibs. 8
8320711 1993
32
Interphase cytogenetics of the ICF syndrome. 8
1449239 1992
33
Unknown syndrome: ischiadic hypoplasia, renal dysfunction, immunodeficiency, and a pattern of minor congenital anomalies. 8
1999836 1991
34
Centromeric heterochromatin instability of chromosomes 1, 9, and 16 in variable immunodeficiency syndrome--a virus-induced phenomenon? 8
2196213 1990
35
Fragility of the centromeric region of chromosome 1 associated with combined immunodeficiency in siblings. A recessively inherited entity? 8
2386052 1990
36
Differential expression of the ICF (immunodeficiency, centromeric heterochromatin, facial anomalies) mutation in lymphocytes and fibroblasts. 8
2746618 1989
37
Multibranched chromosomes in the ICF syndrome: immunodeficiency, centromeric instability, and facial anomalies. 8
2729362 1989
38
Variable immunodeficiency with abnormal condensation of the heterochromatin of chromosomes 1, 9, and 16. 71
3361388 1988
39
Immunodeficiency, centromeric heterochromatin instability of chromosomes 1, 9, and 16, and facial anomalies: the ICF syndrome. 8
3351904 1988
40
Centromeric instability of chromosomes 1, 9 and 16 with variable immune deficiency. Support of a new syndrome. 8
3568436 1987
41
Centromeric instability of chromosomes 1 and 16 with variable immune deficiency: a new syndrome. 8
4006276 1985
42
Centromeric instability of chromosomes 1, 9, and 16 associated with combined immunodeficiency. 8
7262865 1981
43
Multibranched chromosomes 1, 9, and 16 in a patient with combined IgA and IgE deficiency. 8
511139 1979
44
Clinical and Immunological Characterization of ICF Syndrome in Japan. 38
30353301 2018
45
Subtelomeric methylation distinguishes between subtypes of Immunodeficiency, Centromeric instability and Facial anomalies syndrome. 38
30010917 2018
46
Comparative methylome analysis of ICF patients identifies heterochromatin loci that require ZBTB24, CDCA7 and HELLS for their methylated state. 38
29659838 2018
47
Marker-assisted pyramiding of two major, broad-spectrum bacterial blight resistance genes, Xa21 and Xa33 into an elite maintainer line of rice, DRR17B. 38
30359375 2018
48
Expanding the mutation spectrum in ICF syndrome: Evidence for a gender bias in ICF2. 38
28128455 2017
49
ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing. 38
28334849 2017
50
Vesicourethral reflux-induced renal failure in a patient with ICF syndrome due to a novel DNMT3B mutation. 38
27604394 2016
Sources

Variations for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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ClinVar genetic disease variations for Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

6 (show top 50) (show all 123)
# Gene Variation Type Significance SNP ID GRCh37 Pos GRCh38 Pos
1 DNMT3B NM_006892.4(DNMT3B): c.2450A> G (p.Asp817Gly) single nucleotide variant Pathogenic rs121908939 20:31395597-31395597 20:32807791-32807791
2 DNMT3B NM_006892.4(DNMT3B): c.2452G> A (p.Val818Met) single nucleotide variant Pathogenic rs121908940 20:31395599-31395599 20:32807793-32807793
3 DNMT3B NM_006892.4(DNMT3B): c.2177T> G (p.Val726Gly) single nucleotide variant Pathogenic 20:31390222-31390222 20:32802416-32802416
4 DNMT3B NM_006892.4(DNMT3B): c.1987G> A (p.Gly663Ser) single nucleotide variant Pathogenic rs121908942 20:31388722-31388722 20:32800916-32800916
5 DNMT3B DNMT3B, LEU656THR undetermined variant Pathogenic
6 DNMT3B DNMT3B, EX21-22DEL deletion Pathogenic
7 DNMT3B DNMT3B, 1-BP INS, CODON 53 insertion Pathogenic
8 DNMT3B NM_006892.4(DNMT3B): c.1807G> A (p.Ala603Thr) single nucleotide variant Pathogenic rs121908943 20:31388006-31388006 20:32800200-32800200
9 DNMT3B NM_006892.4(DNMT3B): c.2421-11G> A single nucleotide variant Pathogenic rs547940069 20:31395557-31395557 20:32807751-32807751
10 DNMT3B NM_006892.4(DNMT3B): c.2237T> G (p.Val746Gly) single nucleotide variant Pathogenic rs121908944 20:31393149-31393149 20:32805343-32805343
11 DNMT3B NM_006892.4(DNMT3B): c.88C> T (p.Gln30Ter) single nucleotide variant Pathogenic rs121908945 20:31368217-31368217 20:32780411-32780411
12 DNMT3B NM_006892.4(DNMT3B): c.2519G> A (p.Arg840Gln) single nucleotide variant Pathogenic rs121908946 20:31395666-31395666 20:32807860-32807860
13 DNMT3B NM_006892.4(DNMT3B): c.808T> C (p.Ser270Pro) single nucleotide variant Pathogenic rs121908947 20:31376813-31376813 20:32789007-32789007
14 DNMT3B NM_006892.4(DNMT3B): c.2348_2349del (p.Gln783fs) deletion Likely pathogenic 20:31394061-31394062 20:32806255-32806256
15 DNMT3B NM_006892.4(DNMT3B): c.1760-8C> T single nucleotide variant Conflicting interpretations of pathogenicity rs2424926 20:31387951-31387951 20:32800145-32800145
16 DNMT3B NM_006892.4(DNMT3B): c.1211A> G (p.Tyr404Cys) single nucleotide variant Conflicting interpretations of pathogenicity rs143462810 20:31383299-31383299 20:32795493-32795493
17 DNMT3B NM_006892.4(DNMT3B): c.1557G> A (p.Gln519=) single nucleotide variant Conflicting interpretations of pathogenicity rs150314851 20:31386332-31386332 20:32798526-32798526
18 DNMT3B NM_006892.4(DNMT3B): c.922-8C> T single nucleotide variant Conflicting interpretations of pathogenicity rs200508870 20:31380424-31380424 20:32792618-32792618
19 DNMT3B NM_006892.4(DNMT3B): c.1996+9C> T single nucleotide variant Conflicting interpretations of pathogenicity rs143448185 20:31388740-31388740 20:32800934-32800934
20 DNMT3B NM_006892.4(DNMT3B): c.143-8C> T single nucleotide variant Conflicting interpretations of pathogenicity rs200349528 20:31369151-31369151 20:32781345-32781345
21 DNMT3B NM_006892.4(DNMT3B): c.1957G> A (p.Asp653Asn) single nucleotide variant Conflicting interpretations of pathogenicity rs1438362757 20:31388692-31388692 20:32800886-32800886
22 DNMT3B NM_006892.4(DNMT3B): c.167C> T (p.Ser56Phe) single nucleotide variant Uncertain significance rs764811687 20:31369183-31369183 20:32781377-32781377
23 DNMT3B NM_006892.4(DNMT3B): c.1144C> T (p.Arg382Cys) single nucleotide variant Uncertain significance rs35846833 20:31383232-31383232 20:32795426-32795426
24 DNMT3B NM_006892.4(DNMT3B): c.1834G> T (p.Ala612Ser) single nucleotide variant Uncertain significance rs762537914 20:31388033-31388033 20:32800227-32800227
25 DNMT3B NM_006892.4(DNMT3B): c.2292G> T (p.Arg764Ser) single nucleotide variant Uncertain significance rs759448571 20:31393204-31393204 20:32805398-32805398
26 DNMT3B NM_006892.4(DNMT3B): c.*942A> T single nucleotide variant Uncertain significance rs55901282 20:31396651-31396651 20:32808845-32808845
27 DNMT3B NM_006892.4(DNMT3B): c.886G> A (p.Val296Ile) single nucleotide variant Uncertain significance rs145632647 20:31379479-31379479 20:32791673-32791673
28 DNMT3B NM_006892.4(DNMT3B): c.565G> A (p.Ala189Thr) single nucleotide variant Uncertain significance rs147591633 20:31375168-31375168 20:32787362-32787362
29 DNMT3B NM_006892.4(DNMT3B): c.73G> A (p.Gly25Arg) single nucleotide variant Uncertain significance rs151128145 20:31368202-31368202 20:32780396-32780396
30 DNMT3B NM_006892.4(DNMT3B): c.290G> A (p.Arg97His) single nucleotide variant Uncertain significance rs200902224 20:31372649-31372649 20:32784843-32784843
31 DNMT3B NM_006892.4(DNMT3B): c.2346A> C (p.Lys782Asn) single nucleotide variant Uncertain significance rs1555842652 20:31394059-31394059 20:32806253-32806253
32 DNMT3B NM_006892.4(DNMT3B): c.904A> G (p.Met302Val) single nucleotide variant Uncertain significance rs768136416 20:31379497-31379497 20:32791691-32791691
33 DNMT3B NM_006892.4(DNMT3B): c.960C> A (p.Ser320Arg) single nucleotide variant Uncertain significance rs886056613 20:31380470-31380470 20:32792664-32792664
34 DNMT3B NM_006892.4(DNMT3B): c.1297+10T> C single nucleotide variant Uncertain significance rs146299831 20:31383510-31383510 20:32795704-32795704
35 DNMT3B NM_006892.4(DNMT3B): c.*55G> T single nucleotide variant Uncertain significance rs148465200 20:31395764-31395764 20:32807958-32807958
36 DNMT3B NM_006892.4(DNMT3B): c.*70G> A single nucleotide variant Uncertain significance rs886056618 20:31395779-31395779 20:32807973-32807973
37 DNMT3B NM_006892.4(DNMT3B): c.*90T> G single nucleotide variant Uncertain significance rs886056619 20:31395799-31395799 20:32807993-32807993
38 DNMT3B NM_006892.4(DNMT3B): c.*183C> T single nucleotide variant Uncertain significance rs886056620 20:31395892-31395892 20:32808086-32808086
39 DNMT3B NM_006892.4(DNMT3B): c.*245dup duplication Uncertain significance rs886056621 20:31395954-31395954 20:32808148-32808148
40 DNMT3B NM_006892.4(DNMT3B): c.*113G> A single nucleotide variant Uncertain significance rs563626929 20:31395822-31395822 20:32808016-32808016
41 DNMT3B NM_006892.4(DNMT3B): c.*577C> T single nucleotide variant Uncertain significance rs886056623 20:31396286-31396286 20:32808480-32808480
42 DNMT3B NM_006892.4(DNMT3B): c.*747C> T single nucleotide variant Uncertain significance rs553256979 20:31396456-31396456 20:32808650-32808650
43 DNMT3B NM_006892.4(DNMT3B): c.*1350G> C single nucleotide variant Uncertain significance rs563126581 20:31397059-31397059 20:32809253-32809253
44 DNMT3B NM_006892.4(DNMT3B): c.-274C> T single nucleotide variant Uncertain significance rs139762513 20:31350238-31350238 20:32762432-32762432
45 DNMT3B NM_006892.4(DNMT3B): c.-163A> C single nucleotide variant Uncertain significance rs545638472 20:31350349-31350349 20:32762543-32762543
46 DNMT3B NM_006892.4(DNMT3B): c.1035C> T (p.Ile345=) single nucleotide variant Uncertain significance rs150148922 20:31380545-31380545 20:32792739-32792739
47 DNMT3B NM_006892.4(DNMT3B): c.1760-9C> T single nucleotide variant Uncertain significance rs886056615 20:31387950-31387950 20:32800144-32800144
48 DNMT3B NM_006892.4(DNMT3B): c.1804G> A (p.Val602Ile) single nucleotide variant Uncertain significance rs752495145 20:31388003-31388003 20:32800197-32800197
49 DNMT3B NM_006892.4(DNMT3B): c.1219G> A (p.Gly407Ser) single nucleotide variant Uncertain significance rs148646143 20:31383307-31383307 20:32795501-32795501
50 DNMT3B NM_006892.4(DNMT3B): c.1860G> C (p.Gly620=) single nucleotide variant Uncertain significance rs886056616 20:31388059-31388059 20:32800253-32800253

UniProtKB/Swiss-Prot genetic disease variations for Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1:

74 (show all 14)
# Symbol AA change Variation ID SNP ID
1 DNMT3B p.Ala603Thr VAR_011499 rs121908943
2 DNMT3B p.Gly663Ser VAR_011500 rs121908942
3 DNMT3B p.Val726Gly VAR_011501 rs121908941
4 DNMT3B p.Asp817Gly VAR_011503 rs121908939
5 DNMT3B p.Val818Met VAR_011504 rs121908940
6 DNMT3B p.Ala585Val VAR_011506
7 DNMT3B p.Val606Ala VAR_011507 rs867732105
8 DNMT3B p.Val699Gly VAR_011508
9 DNMT3B p.Ala766Pro VAR_011509 rs119120366
10 DNMT3B p.His814Arg VAR_011510 rs121969612
11 DNMT3B p.Ser270Pro VAR_022579 rs121908947
12 DNMT3B p.Leu664Pro VAR_022580
13 DNMT3B p.Arg840Gln VAR_022581 rs121908946
14 DNMT3B p.Ala585Thr VAR_077528 rs750849178

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Expression for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Search GEO for disease gene expression data for Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1.
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Pathways for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Pathways related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 according to GeneCards Suite gene sharing:

# Super pathways Score Top Affiliating Genes
1
Chromatin Regulation / Acetylation 4
11.66 MECP2 DNMT3B DNMT1 CBX5
2
Primary immunodeficiency 37
10.89 CD79A CD40LG
3
Hematopoietic Stem Cell Gene Regulation by GABP alpha/beta Complex 1
10.6 DNMT3B DNMT1
4
Macrophage Differentiation and Growth Inhibition by METS 64
Show member pathways
 10.52 MECP2 DNMT3B DNMT1
5
Cytosine methylation 1
Show member pathways
 10.27 MECP2 DNMT1
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GO Terms for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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Cellular components related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 pericentric heterochromatin GO:0005721 8.96 DNMT1 CBX5
2 heterochromatin GO:0000792 8.8 MECP2 DNMT1 CBX5

Biological processes related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 negative regulation of transcription by RNA polymerase II GO:0000122 9.67 MECP2 DNMT3B DNMT1 CBX5
2 negative regulation of transcription, DNA-templated GO:0045892 9.65 MECP2 DNMT1 CBX5
3 regulation of gene expression GO:0010468 9.5 MECP2 DNMT3B DNMT1
4 B cell differentiation GO:0030183 9.46 CD79A CD40LG
5 negative regulation of gene expression, epigenetic GO:0045814 9.43 DNMT3B DNMT1
6 B cell proliferation GO:0042100 9.4 CD79A CD40LG
7 DNA methylation GO:0006306 9.26 DNMT3B DNMT1
8 positive regulation of histone H3-K4 methylation GO:0051571 9.16 DNMT3B DNMT1
9 negative regulation of histone H3-K9 methylation GO:0051573 8.96 DNMT3B DNMT1
10 C-5 methylation of cytosine GO:0090116 8.62 DNMT3B DNMT1

Molecular functions related to Immunodeficiency-Centromeric Instability-Facial Anomalies Syndrome 1 according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 chromatin binding GO:0003682 9.43 DNMT3B DNMT1 CBX5
2 methyl-CpG binding GO:0008327 9.16 MECP2 DNMT1
3 DNA-methyltransferase activity GO:0009008 8.96 DNMT3B DNMT1
4 DNA (cytosine-5-)-methyltransferase activity GO:0003886 8.62 DNMT3B DNMT1
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Sources for Immunodeficiency-Centromeric Instability-Facial Anomalies...

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3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 EFO
18 ExPASy
19 FMA
28 GO
29 GTR
30 HGMD
31 HMDB
32 HPO
33 ICD10
34 ICD10 via Orphanet
35 ICD9CM
36 IUPHAR
37 KEGG
38 LifeMap
40 LOVD
42 MedGen
44 MeSH
45 MESH via Orphanet
46 MGI
49 NCI
50 NCIt
51 NDF-RT
54 NINDS
55 Novoseek
57 OMIM
58 OMIM via Orphanet
62 PubMed
64 QIAGEN
69 SNOMED-CT via HPO
70 TGDB
71 Tocris
72 UMLS
73 UMLS via Orphanet
The MalaCards human disease database index: 1-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
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