Microcephaly 11, Primary, Autosomal Recessive disease: Malacards - Research Articles, Drugs, Genes, Clinical Trials

Sources

Aliases & Classifications for Microcephaly 11, Primary, Autosomal Recessive

MalaCards integrated aliases for Microcephaly 11, Primary, Autosomal Recessive:

Name: Microcephaly 11, Primary, Autosomal Recessive ⁵⁶ ⁷³ ⁷¹

Primary Autosomal Recessive Microcephaly 11 ¹² ²⁹ ⁶ ¹⁵

Mcph11 ⁵⁶ ¹² ⁷³

Microcephaly, Type 11, Primary, Autosomal Recessive ³⁹

Characteristics:

OMIM:

⁵⁶

Inheritance:
autosomal recessive

Miscellaneous:
one family has been reported (last curated september 2013)

HPO:

³¹

microcephaly 11, primary, autosomal recessive:
Inheritance autosomal recessive inheritance

Classifications:

MalaCards categories:
Global: Genetic diseases Rare diseases Fetal diseases
Anatomical: Neuronal diseases Eye diseases Mental diseases

See all MalaCards categories (disease lists)

External Ids:

Disease Ontology ¹² DOID:0070287

OMIM ⁵⁶ 615414

OMIM Phenotypic Series ⁵⁶ PS251200

MeSH ⁴³ D008831

MedGen ⁴¹ C3809431 CN180048

SNOMED-CT via HPO ⁶⁸ 237836003 258211005 271611007

UMLS ⁷¹ C3809431

Sources

Summaries for Microcephaly 11, Primary, Autosomal Recessive

UniProtKB/Swiss-Prot : ⁷³ Microcephaly 11, primary, autosomal recessive: A form of microcephaly, a disease defined as a head circumference more than 3 standard deviations below the age-related mean. Brain weight is markedly reduced and the cerebral cortex is disproportionately small.

MalaCards based summary : Microcephaly 11, Primary, Autosomal Recessive, also known as primary autosomal recessive microcephaly 11, is related to microcephaly 13, primary, autosomal recessive and lissencephaly 2. An important gene associated with Microcephaly 11, Primary, Autosomal Recessive is PHC1 (Polyhomeotic Homolog 1), and among its related pathways/superpathways are Cell Cycle, Mitotic and Regulation of PLK1 Activity at G2/M Transition. Affiliated tissues include brain, cortex and eye, and related phenotypes are short stature and microcephaly

Disease Ontology : ¹² A primary autosomal recessive microcephaly that has material basis in homozygous or compound heterozygous mutation in the PHC1 gene on chromosome 12p13.

More information from OMIM: 615414 PS251200

Sources

Related Diseases for Microcephaly 11, Primary, Autosomal Recessive

Diseases in the Microcephaly family:

Microcephaly, Autosomal Dominant	Microcephaly 1, Primary, Autosomal Recessive
Microcephaly 4, Primary, Autosomal Recessive	Microcephaly 3, Primary, Autosomal Recessive
Microcephaly 6, Primary, Autosomal Recessive	Microcephaly 5, Primary, Autosomal Recessive
Microcephaly 7, Primary, Autosomal Recessive	Microcephaly 8, Primary, Autosomal Recessive
Microcephaly 9, Primary, Autosomal Recessive	Microcephaly 10, Primary, Autosomal Recessive
Microcephaly 11, Primary, Autosomal Recessive	Microcephaly 13, Primary, Autosomal Recessive
Microcephaly 12, Primary, Autosomal Recessive	Microcephaly 14, Primary, Autosomal Recessive
Microcephaly 15, Primary, Autosomal Recessive	Microcephaly 16, Primary, Autosomal Recessive
Microcephaly 17, Primary, Autosomal Recessive	Microcephaly 18, Primary, Autosomal Dominant
Microcephaly 19, Primary, Autosomal Recessive	Microcephaly 20, Primary, Autosomal Recessive
Microcephaly 21, Primary, Autosomal Recessive	Microcephaly 22, Primary, Autosomal Recessive
Microcephaly 23, Primary, Autosomal Recessive	Microcephaly 24, Primary, Autosomal Recessive
Microcephaly 25, Primary, Autosomal Recessive	Primary Autosomal Recessive Microcephaly
Primary Microcephaly

Diseases related to Microcephaly 11, Primary, Autosomal Recessive via text searches within MalaCards or GeneCards Suite gene sharing:

(show all 33)

#	Related Disease	Score	Top Affiliating Genes
1	microcephaly 13, primary, autosomal recessive	9.9	ZNF335 WDR62
2	lissencephaly 2	9.6	WDR62 CEP152
3	band heterotopia	9.6	WDR62 MCPH1
4	seckel syndrome 1	9.3	CEP152 CENPJ
5	seckel syndrome 5	9.3	MCPH1 CEP152 CENPJ
6	seckel syndrome 4	9.3	MCPH1 CEP152 CENPJ
7	microcephaly 1, primary, autosomal recessive	9.2	MCPH1 CEP152 CENPJ
8	seckel syndrome 2	9.2	CEP152 CENPJ CDK5RAP2
9	microcephaly 18, primary, autosomal dominant	8.9	ZNF335 CEP152 CEP135 CENPJ
10	periventricular nodular heterotopia	8.9	WDR62 MCPH1 CENPJ CDK5RAP2
11	autosomal recessive non-syndromic intellectual disability	8.8	WDR62 MCPH1 CEP152 CEP135 CDK5RAP2
12	microcephaly 10, primary, autosomal recessive	8.8	ZNF335 WDR62 PHC1 MIR4528 CEP152 CEP135
13	joubert syndrome 1	8.8	MCPH1 CEP152 CENPJ CDK5RAP2
14	microcephaly 8, primary, autosomal recessive	8.6	WDR62 MIR4528 MCPH1 CEP152 CEP135 CDK5RAP2
15	microcephalic osteodysplastic primordial dwarfism, type ii	8.6	MCPH1 CEP152 CEP135 CENPJ CDK5RAP2
16	microcephaly 17, primary, autosomal recessive	8.6	WDR62 MCPH1 CEP152 CENPJ CDK5RAP2
17	meier-gorlin syndrome 1	8.5	ZNF335 WDR62 CEP152 CEP135 CENPJ
18	microcephaly 9, primary, autosomal recessive	8.4	ZNF335 WDR62 MIR4528 CEP152 CEP135 CENPJ
19	microcephaly 12, primary, autosomal recessive	8.1	ZNF335 WDR62 MIR4528 MCPH1 CEP152 CEP135
20	microcephaly 7, primary, autosomal recessive	8.0	WDR62 MIR4528 MCPH1 CEP152 CEP135 CENPJ
21	microcephaly 6, primary, autosomal recessive	8.0	WDR62 MIR4528 MCPH1 CEP152 CEP135 CENPJ
22	microcephaly 3, primary, autosomal recessive	8.0	WDR62 MIR4528 MCPH1 CEP152 CEP135 CENPJ
23	seckel syndrome	8.0	WDR62 PHC1 MCPH1 CEP152 CEP135 CENPJ
24	physical disorder	8.0	WDR62 PAGR1 MCPH1 CEP152 CEP135 CENPJ
25	isolated growth hormone deficiency, type ia	7.9	ZNF335 WDR62 MCPH1 CEP152 CEP135 CENPJ
26	microcephaly	7.7	ZNF335 WDR62 PHC1 MCPH1 CEP152 CEP135
27	microcephaly 15, primary, autosomal recessive	7.7	ZNF335 WDR62 PHC1 MCPH1 CEP152 CEP135
28	congenital nervous system abnormality	7.7	ZNF335 WDR62 PAGR1 MCPH1 CEP152 CEP135
29	microcephaly 4, primary, autosomal recessive	7.7	ZNF335 WDR62 MIR4528 MCPH1 CEP152 CEP135
30	primary microcephaly	7.5	ZNF335 WDR62 PHC1 PAGR1 MCPH1 CEP152
31	microcephaly 5, primary, autosomal recessive	7.4	ZNF335 WDR62 PHC1 MIR4528 MCPH1 CEP152
32	microcephaly 2, primary, autosomal recessive, with or without cortical malformations	7.4	ZNF335 WDR62 PHC1 MIR4528 MCPH1 CEP152
33	primary autosomal recessive microcephaly	7.2	ZNF335 WDR62 PHC1 PAGR1 MIR4528 MCPH1

Graphical network of the top 20 diseases related to Microcephaly 11, Primary, Autosomal Recessive:

Sources

Symptoms & Phenotypes for Microcephaly 11, Primary, Autosomal Recessive

Human phenotypes related to Microcephaly 11, Primary, Autosomal Recessive:

³¹

#	Description	HPO Frequency	HPO Source Accession
1	short stature ³¹		HP:0004322
2	microcephaly ³¹		HP:0000252

Symptoms via clinical synopsis from OMIM:

⁵⁶

Growth Height:
short stature

Head And Neck Head:
microcephaly (-4 to -5 sd)

Neurologic Central Nervous System:
low-normal intelligence
normal brain mri

Clinical features from OMIM:

615414

MGI Mouse Phenotypes related to Microcephaly 11, Primary, Autosomal Recessive:

⁴⁵

#	Description	MGI Source Accession	Score	Top Affiliating Genes
1	growth/size/body region	MP:0005378	9.7	CDK5RAP2 CENPJ CEP135 MCPH1 PAGR1 PHC1
2	nervous system	MP:0003631	9.5	CDK5RAP2 CENPJ CEP152 MCPH1 PAGR1 WDR62
3	vision/eye	MP:0005391	9.1	CDK5RAP2 CENPJ CEP135 MCPH1 PHC1 WDR62

Sources

Drugs & Therapeutics for Microcephaly 11, Primary, Autosomal Recessive

Search Clinical Trials , NIH Clinical Center for Microcephaly 11, Primary, Autosomal Recessive

Sources

Genetic Tests for Microcephaly 11, Primary, Autosomal Recessive

Genetic tests related to Microcephaly 11, Primary, Autosomal Recessive:

#	Genetic test	Affiliating Genes
1	Primary Autosomal Recessive Microcephaly 11 ²⁹	PHC1

Sources

Anatomical Context for Microcephaly 11, Primary, Autosomal Recessive

MalaCards organs/tissues related to Microcephaly 11, Primary, Autosomal Recessive:

⁴⁰

Brain, Cortex, Eye

Sources

Publications for Microcephaly 11, Primary, Autosomal Recessive

Articles related to Microcephaly 11, Primary, Autosomal Recessive:

#	Title	Authors	PMID	Year
1	Mutation in PHC1 implicates chromatin remodeling in primary microcephaly pathogenesis. ⁵⁶ ⁶	Awad S...Poizat C	23418308	2013
2	Primary Autosomal Recessive Microcephalies and Seckel Syndrome Spectrum Disorders ⁶¹ ⁶	Verloes A...Passemard S	20301772	2009
3	Mcph1/Brit1 deficiency promotes genomic instability and tumor formation in a mouse model. ⁶¹	Liang Y...Li K	25362854	2015

Sources

Genes for Microcephaly 11, Primary, Autosomal Recessive

Genes related to Microcephaly 11, Primary, Autosomal Recessive (1 elite genes):

- Elite gene

- Cancer Census gene in COSMIC

#	Symbol	Description	Category	Score	Evidence	PubmedIds
1	PHC1	Polyhomeotic Homolog 1	Protein Coding	1374.62	Molecular basis known ⁵⁶ Pathogenic/Likely pathogenic ⁶ Causative variation ⁷³ Genetic Tests ²⁹ Unconfirmed association ⁵⁶ DISEASES inferred ¹⁵ GeneCards inferred via : Disorders Variants (show sections)	23418308
2	PAGR1	PAXIP1 Associated Glutamate Rich Protein 1	Protein Coding	10.94	DISEASES inferred ¹⁵ ¹⁵
3	MIR4528	MicroRNA 4528	RNA Gene	7.51	DISEASES inferred ¹⁵
4	MCPH1	Microcephalin 1	Protein Coding	7.27	DISEASES inferred ¹⁵
5	ZNF335	Zinc Finger Protein 335	Protein Coding	7.18	DISEASES inferred ¹⁵
6	CEP135	Centrosomal Protein 135	Protein Coding	7.06	DISEASES inferred ¹⁵
7	WDR62	WD Repeat Domain 62	Protein Coding	6.7	DISEASES inferred ¹⁵
8	CEP152	Centrosomal Protein 152	Protein Coding	6.67	DISEASES inferred ¹⁵
9	CENPJ	Centromere Protein J	Protein Coding	6.6	DISEASES inferred ¹⁵
10	CDK5RAP2	CDK5 Regulatory Subunit Associated Protein 2	Protein Coding	6.54	DISEASES inferred ¹⁵

Sources

Variations for Microcephaly 11, Primary, Autosomal Recessive

ClinVar genetic disease variations for Microcephaly 11, Primary, Autosomal Recessive:

⁶ ‎‎ ‎‎

#	Gene	Name	Type	Significance	ClinVarId	dbSNP ID	GRCh37 Pos	GRCh38 Pos
1	PHC1	NM_004426.3(PHC1):c.2974C>T (p.Leu992Phe)	SNV	Pathogenic/Likely pathogenic	65406	rs587777036	12:9092014-9092014	12:8939418-8939418
2	PHC1	NM_004426.3(PHC1):c.2626C>T (p.Arg876Trp)	SNV	Uncertain significance	211897	rs372044180	12:9089920-9089920	12:8937324-8937324

UniProtKB/Swiss-Prot genetic disease variations for Microcephaly 11, Primary, Autosomal Recessive:

⁷³

#	Symbol	AA change	Variation ID	SNP ID
1	PHC1	p.Leu992Phe	VAR_070566	rs587777036

Sources

Expression for Microcephaly 11, Primary, Autosomal Recessive

Search GEO for disease gene expression data for Microcephaly 11, Primary, Autosomal Recessive.

Sources

Pathways for Microcephaly 11, Primary, Autosomal Recessive

Pathways related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

#	Super pathways	Score	Top Affiliating Genes
1	Cell Cycle, Mitotic ⁶⁵ Show member pathways Cell Cycle ⁶⁵ M Phase ⁶⁵	12.51	MCPH1 CEP152 CEP135 CENPJ CDK5RAP2
2	Regulation of PLK1 Activity at G2/M Transition ⁶⁵ Show member pathways Anchoring of the basal body to the plasma membrane ⁶⁵ AURKA Activation by TPX2 ⁶⁵ Centrosome maturation ⁶⁵ G2/M Transition ⁶⁵ Interaction between PHLDA1 and AURKA ⁶⁵ Loss of Nlp from mitotic centrosomes ⁶⁵ Loss of proteins required for interphase microtubule organization from the centrosome ⁶⁵ Mitotic G2-G2/M phases ⁶⁵ Polo-like kinase mediated events ⁶⁵ Recruitment of mitotic centrosome proteins and complexes ⁶⁵ Recruitment of NuMA to mitotic centrosomes ⁶⁵	12.44	CEP152 CEP135 CENPJ CDK5RAP2
3	Organelle biogenesis and maintenance ⁶⁵ Show member pathways Cilium Assembly ⁶⁵	11.65	CEP152 CEP135 CENPJ CDK5RAP2

Sources

GO Terms for Microcephaly 11, Primary, Autosomal Recessive

Cellular components related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

#	Name	GO ID	Score	Top Affiliating Genes
1	cytoskeleton	GO:0005856	9.73	WDR62 MCPH1 CEP152 CEP135 CENPJ CDK5RAP2
2	centrosome	GO:0005813	9.55	WDR62 CEP152 CEP135 CENPJ CDK5RAP2
3	histone methyltransferase complex	GO:0035097	9.37	ZNF335 PAGR1
4	microtubule organizing center	GO:0005815	9.35	WDR62 MCPH1 CEP152 CENPJ CDK5RAP2
5	pericentriolar material	GO:0000242	9.32	CEP152 CDK5RAP2
6	centriole	GO:0005814	8.92	WDR62 CEP152 CEP135 CENPJ

Biological processes related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

#	Name	GO ID	Score	Top Affiliating Genes
1	G2/M transition of mitotic cell cycle	GO:0000086	9.56	CEP152 CEP135 CENPJ CDK5RAP2
2	cerebral cortex development	GO:0021987	9.48	WDR62 MCPH1
3	neurogenesis	GO:0022008	9.46	WDR62 CDK5RAP2
4	ciliary basal body-plasma membrane docking	GO:0097711	9.46	CEP152 CEP135 CENPJ CDK5RAP2
5	establishment of mitotic spindle orientation	GO:0000132	9.43	MCPH1 CDK5RAP2
6	centrosome duplication	GO:0051298	9.4	CEP152 CENPJ
7	positive regulation of non-motile cilium assembly	GO:1902857	9.37	CEP135 CENPJ
8	positive regulation of establishment of protein localization	GO:1904951	9.32	CEP135 CENPJ
9	regulation of G2/M transition of mitotic cell cycle	GO:0010389	9.26	CEP152 CEP135 CENPJ CDK5RAP2
10	centriole replication	GO:0007099	9.02	WDR62 CEP152 CEP135 CENPJ CDK5RAP2

Molecular functions related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

#	Name	GO ID	Score	Top Affiliating Genes
1	tubulin binding	GO:0015631	8.62	CENPJ CDK5RAP2

Sources

Sources for Microcephaly 11, Primary, Autosomal Recessive

¹ BioSystems

² BitterDB

³ CDC

⁴ Cell Signaling Technology

⁵ ClinicalTrials

⁶ ClinVar

⁷ CNVD

⁸ Cochrane Library

⁹ Cosmic

¹⁰ dbSNP

¹¹ DGIdb

¹² Disease Ontology

¹³ diseasecard

¹⁴ DiseaseEnhancer

¹⁵ DISEASES

¹⁶ DrugBank

¹⁷ EFO

¹⁸ ExPASy

¹⁹ FMA

²⁰ GeneAnalytics

²¹ GeneCards

²² GeneGo (Thomson Reuters)

²³ GeneHancer via GeneCards

²⁴ GeneReviews

²⁵ Genetics Home Reference

²⁶ GenomeRNAi

²⁷ GEO DataSets

²⁸ GO

²⁹ GTR

³⁰ HMDB

³¹ HPO

³² ICD10

³³ ICD10 via Orphanet

³⁴ ICD9CM

³⁵ IUPHAR

³⁶ KEGG

³⁷ LifeMap

³⁸ LncRNADisease

³⁹ LOVD

⁴⁰ MalaCards

⁴¹ MedGen

⁴² MedlinePlus

⁴³ MeSH

⁴⁴ MESH via Orphanet

⁴⁵ MGI

⁴⁶ miR2Disease

⁴⁷ NCBI Bookshelf

⁴⁸ NCI

⁴⁹ NCIt

⁵⁰ NDF-RT

⁵¹ NIH Clinical Center

⁵² NIH Rare Diseases

⁵³ NINDS

⁵⁴ Novoseek

⁵⁵ Novus Biologicals

⁵⁶ OMIM

⁵⁷ OMIM via Orphanet

⁵⁸ Orphanet

⁵⁹ PathCards

⁶⁰ PharmGKB

⁶¹ PubMed

⁶² PubMed Health

⁶³ QIAGEN

⁶⁴ R&D Systems

⁶⁵ Reactome

⁶⁶ Sino Biological

⁶⁷ SNOMED-CT

⁶⁸ SNOMED-CT via HPO

⁶⁹ TGDB

⁷⁰ Tocris

⁷¹ UMLS

⁷² UMLS via Orphanet

⁷³ UniProtKB/Swiss-Prot

⁷⁴ Wikipedia

Microcephaly 11, Primary, Autosomal Recessive (MCPH11)

Aliases & Classifications for Microcephaly 11, Primary, Autosomal Recessive

MalaCards integrated aliases for Microcephaly 11, Primary, Autosomal Recessive:

Characteristics:

OMIM:

HPO:

Classifications:

External Ids:

Summaries for Microcephaly 11, Primary, Autosomal Recessive

Related Diseases for Microcephaly 11, Primary, Autosomal Recessive

Diseases in the Microcephaly family:

Diseases related to Microcephaly 11, Primary, Autosomal Recessive via text searches within MalaCards or GeneCards Suite gene sharing:

Graphical network of the top 20 diseases related to Microcephaly 11, Primary, Autosomal Recessive:

Symptoms & Phenotypes for Microcephaly 11, Primary, Autosomal Recessive

Human phenotypes related to Microcephaly 11, Primary, Autosomal Recessive:

Symptoms via clinical synopsis from OMIM:

Clinical features from OMIM:

MGI Mouse Phenotypes related to Microcephaly 11, Primary, Autosomal Recessive:

Drugs & Therapeutics for Microcephaly 11, Primary, Autosomal Recessive

Genetic Tests for Microcephaly 11, Primary, Autosomal Recessive

Genetic tests related to Microcephaly 11, Primary, Autosomal Recessive:

Anatomical Context for Microcephaly 11, Primary, Autosomal Recessive

MalaCards organs/tissues related to Microcephaly 11, Primary, Autosomal Recessive:

Publications for Microcephaly 11, Primary, Autosomal Recessive

Articles related to Microcephaly 11, Primary, Autosomal Recessive:

Genes for Microcephaly 11, Primary, Autosomal Recessive

Genes related to Microcephaly 11, Primary, Autosomal Recessive (1 elite genes):

Variations for Microcephaly 11, Primary, Autosomal Recessive

ClinVar genetic disease variations for Microcephaly 11, Primary, Autosomal Recessive:

UniProtKB/Swiss-Prot genetic disease variations for Microcephaly 11, Primary, Autosomal Recessive:

Expression for Microcephaly 11, Primary, Autosomal Recessive

Pathways for Microcephaly 11, Primary, Autosomal Recessive

Pathways related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

GO Terms for Microcephaly 11, Primary, Autosomal Recessive

Cellular components related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

Biological processes related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

Molecular functions related to Microcephaly 11, Primary, Autosomal Recessive according to GeneCards Suite gene sharing:

Sources for Microcephaly 11, Primary, Autosomal Recessive