HSN1F
MCID: NRP036
MIFTS: 25

Neuropathy, Hereditary Sensory, Type if (HSN1F)

Categories: Bone diseases, Ear diseases, Fetal diseases, Genetic diseases, Mental diseases, Neuronal diseases, Rare diseases

Aliases & Classifications for Neuropathy, Hereditary Sensory, Type if

MalaCards integrated aliases for Neuropathy, Hereditary Sensory, Type if:

Name: Neuropathy, Hereditary Sensory, Type if 58 74
Hereditary Sensory Neuropathy Type if 12 76 30 6
Hsn1f 58 12 76
Hereditary Sensory Neuropathy Type 1f 12 15
Hsn if 58 76
Neuropathy, Sensory, Hereditary, Type if 41
Neuropathy, Hereditary Sensory, 1f 76

Characteristics:

OMIM:

58
Inheritance:
autosomal dominant

Miscellaneous:
onset in first or second decade
two unrelated families have been reported (last curated february 2014)


HPO:

33
neuropathy, hereditary sensory, type if:
Inheritance autosomal dominant inheritance


Classifications:



Summaries for Neuropathy, Hereditary Sensory, Type if

OMIM : 58 Hereditary sensory neuropathy type IF is an autosomal dominant sensory neuropathy affecting the lower limbs. Distal sensory impairment becomes apparent during the second or third decade of life, resulting in painless ulceration of the feet with poor healing, which can progress to osteomyelitis, bone destruction, and amputation. There is no autonomic involvement, spasticity, or cognitive impairment (summary by Kornak et al., 2014). For a discussion of genetic heterogeneity of HSN, see HSAN1A (162400). (615632)

MalaCards based summary : Neuropathy, Hereditary Sensory, Type if, also known as hereditary sensory neuropathy type if, is related to hereditary sensory neuropathy and sensory peripheral neuropathy. An important gene associated with Neuropathy, Hereditary Sensory, Type if is ATL3 (Atlastin GTPase 3). Affiliated tissues include bone, and related phenotypes are hyperkeratosis and sensory axonal neuropathy

Disease Ontology : 12 A hereditary sensory and autonomic neuropathy type 1 characterized by distal sensory impairment becomes apparent during the second or third decade of life, resulting in painless ulceration of the feet with poor healing, which can progress to osteomyelitis, bone destruction, and amputation that has material basis in heterozygous mutation in the ATL3 gene on chromosome 11q13.

UniProtKB/Swiss-Prot : 76 Neuropathy, hereditary sensory, 1F: An autosomal dominant sensory neuropathy affecting the lower limbs. Distal sensory impairment becomes apparent during the second or third decade of life, resulting in painless ulceration of the feet with poor healing, which can progress to osteomyelitis, bone destruction, and amputation. There is no autonomic involvement, spasticity, or cognitive impairment.

Related Diseases for Neuropathy, Hereditary Sensory, Type if

Diseases in the Hereditary Sensory Neuropathy family:

Neuropathy, Hereditary Sensory, Type Id Neuropathy, Hereditary Sensory, Type Ie
Neuropathy, Hereditary Sensory, Type Iic Neuropathy, Hereditary Sensory, Type if
Sptlc1-Related Hereditary Sensory Neuropathy Sensory Neuropathy Type 1

Diseases related to Neuropathy, Hereditary Sensory, Type if via text searches within MalaCards or GeneCards Suite gene sharing:

# Related Disease Score Top Affiliating Genes
1 hereditary sensory neuropathy 10.2
2 sensory peripheral neuropathy 10.2
3 neuropathy 10.2

Symptoms & Phenotypes for Neuropathy, Hereditary Sensory, Type if

Human phenotypes related to Neuropathy, Hereditary Sensory, Type if:

33 (show all 8)
# Description HPO Frequency HPO Source Accession
1 hyperkeratosis 33 HP:0000962
2 sensory axonal neuropathy 33 HP:0003390
3 osteomyelitis 33 HP:0002754
4 hallux valgus 33 HP:0001822
5 sensory impairment 33 HP:0003474
6 osteolytic defects of the phalanges of the hand 33 HP:0009771
7 hyporeflexia of lower limbs 33 HP:0002600
8 arthropathy 33 HP:0003040

Symptoms via clinical synopsis from OMIM:

58
Skin Nails Hair Skin:
hyperkeratosis
ulcers, distal, painless, due to sensory neuropathy
foot calluses
plantar ulcers

Skeletal Feet:
osteomyelitis
hallux valgus
acroosteolysis
foot arthropathy
bony destruction
more
Neurologic Peripheral Nervous System:
sensory axonal neuropathy
hyporeflexia of the lower limbs
absent ankle jerks
distal sensory impairment to pain, temperature, and touch, lower limbs

Clinical features from OMIM:

615632

Drugs & Therapeutics for Neuropathy, Hereditary Sensory, Type if

Search Clinical Trials , NIH Clinical Center for Neuropathy, Hereditary Sensory, Type if

Genetic Tests for Neuropathy, Hereditary Sensory, Type if

Genetic tests related to Neuropathy, Hereditary Sensory, Type if:

# Genetic test Affiliating Genes
1 Hereditary Sensory Neuropathy Type if 30 ATL3

Anatomical Context for Neuropathy, Hereditary Sensory, Type if

MalaCards organs/tissues related to Neuropathy, Hereditary Sensory, Type if:

42
Bone

Publications for Neuropathy, Hereditary Sensory, Type if

Articles related to Neuropathy, Hereditary Sensory, Type if:

# Title Authors Year
1
ATL3 gene mutation in a Chinese family with hereditary sensory neuropathy type 1F. ( 30680846 )
2019
2
Sensory neuropathy with bone destruction due to a mutation in the membrane-shaping atlastin GTPase 3. ( 24459106 )
2014

Variations for Neuropathy, Hereditary Sensory, Type if

UniProtKB/Swiss-Prot genetic disease variations for Neuropathy, Hereditary Sensory, Type if:

76
# Symbol AA change Variation ID SNP ID
1 ATL3 p.Tyr192Cys VAR_070973 rs587777108

ClinVar genetic disease variations for Neuropathy, Hereditary Sensory, Type if:

6 (show top 50) (show all 92)
# Gene Variation Type Significance SNP ID Assembly Location
1 ATL3 NM_001290048.1(ATL3): c.521A> G (p.Tyr174Cys) single nucleotide variant Pathogenic rs587777108 GRCh37 Chromosome 11, 63414022: 63414022
2 ATL3 NM_001290048.1(ATL3): c.521A> G (p.Tyr174Cys) single nucleotide variant Pathogenic rs587777108 GRCh38 Chromosome 11, 63646550: 63646550
3 ATL3 NM_015459.4(ATL3): c.1422C> G (p.Asn474Lys) single nucleotide variant Uncertain significance rs1057522704 GRCh37 Chromosome 11, 63398629: 63398629
4 ATL3 NM_015459.4(ATL3): c.1422C> G (p.Asn474Lys) single nucleotide variant Uncertain significance rs1057522704 GRCh38 Chromosome 11, 63631157: 63631157
5 ATL3 NM_015459.4(ATL3): c.661T> G (p.Tyr221Asp) single nucleotide variant Uncertain significance rs1045392653 GRCh37 Chromosome 11, 63411691: 63411691
6 ATL3 NM_015459.4(ATL3): c.661T> G (p.Tyr221Asp) single nucleotide variant Uncertain significance rs1045392653 GRCh38 Chromosome 11, 63644219: 63644219
7 ATL3 NC_000011.10: g.(?_63629299)_(63629425_?)del deletion Uncertain significance GRCh38 Chromosome 11, 63629299: 63629425
8 ATL3 NC_000011.10: g.(?_63629299)_(63629425_?)del deletion Uncertain significance GRCh37 Chromosome 11, 63396771: 63396897
9 ATL3 NM_015459.4(ATL3): c.1599A> G (p.Arg533=) single nucleotide variant Benign rs201636843 GRCh38 Chromosome 11, 63629346: 63629346
10 ATL3 NM_015459.4(ATL3): c.1599A> G (p.Arg533=) single nucleotide variant Benign rs201636843 GRCh37 Chromosome 11, 63396818: 63396818
11 ATL3 NM_015459.4(ATL3): c.1521C> T (p.Ala507=) single nucleotide variant Likely benign rs200026815 GRCh37 Chromosome 11, 63398530: 63398530
12 ATL3 NM_015459.4(ATL3): c.1521C> T (p.Ala507=) single nucleotide variant Likely benign rs200026815 GRCh38 Chromosome 11, 63631058: 63631058
13 ATL3 NM_015459.4(ATL3): c.1501G> A (p.Gly501Arg) single nucleotide variant Benign rs112847445 GRCh38 Chromosome 11, 63631078: 63631078
14 ATL3 NM_015459.4(ATL3): c.1501G> A (p.Gly501Arg) single nucleotide variant Benign rs112847445 GRCh37 Chromosome 11, 63398550: 63398550
15 ATL3 NM_015459.4(ATL3): c.1378C> G (p.Leu460Val) single nucleotide variant Uncertain significance rs1463846374 GRCh38 Chromosome 11, 63631201: 63631201
16 ATL3 NM_015459.4(ATL3): c.1378C> G (p.Leu460Val) single nucleotide variant Uncertain significance rs1463846374 GRCh37 Chromosome 11, 63398673: 63398673
17 ATL3 NM_001290048.1(ATL3): c.924+7dup duplication Benign rs528012262 GRCh38 Chromosome 11, 63636200: 63636200
18 ATL3 NM_001290048.1(ATL3): c.924+7dup duplication Benign rs528012262 GRCh37 Chromosome 11, 63403672: 63403672
19 ATL3 NM_015459.4(ATL3): c.373G> A (p.Val125Ile) single nucleotide variant Likely benign rs200918566 GRCh37 Chromosome 11, 63426265: 63426265
20 ATL3 NM_015459.4(ATL3): c.373G> A (p.Val125Ile) single nucleotide variant Likely benign rs200918566 GRCh38 Chromosome 11, 63658793: 63658793
21 ATL3 NM_015459.4(ATL3): c.1374A> G (p.Ser458=) single nucleotide variant Benign rs17158455 GRCh37 Chromosome 11, 63398677: 63398677
22 ATL3 NM_015459.4(ATL3): c.1374A> G (p.Ser458=) single nucleotide variant Benign rs17158455 GRCh38 Chromosome 11, 63631205: 63631205
23 ATL3 NM_015459.4(ATL3): c.978+9G> A single nucleotide variant Benign rs3781606 GRCh37 Chromosome 11, 63403670: 63403670
24 ATL3 NM_015459.4(ATL3): c.978+9G> A single nucleotide variant Benign rs3781606 GRCh38 Chromosome 11, 63636198: 63636198
25 ATL3 NM_015459.4(ATL3): c.642T> C (p.Asp214=) single nucleotide variant Benign rs151040560 GRCh38 Chromosome 11, 63644238: 63644238
26 ATL3 NM_015459.4(ATL3): c.642T> C (p.Asp214=) single nucleotide variant Benign rs151040560 GRCh37 Chromosome 11, 63411710: 63411710
27 ATL3 NM_015459.4(ATL3): c.418C> T (p.Leu140=) single nucleotide variant Benign rs34261014 GRCh38 Chromosome 11, 63652563: 63652563
28 ATL3 NM_015459.4(ATL3): c.418C> T (p.Leu140=) single nucleotide variant Benign rs34261014 GRCh37 Chromosome 11, 63420035: 63420035
29 ATL3 NM_015459.4(ATL3): c.1434A> G (p.Gly478=) single nucleotide variant Benign rs189119869 GRCh37 Chromosome 11, 63398617: 63398617
30 ATL3 NM_015459.4(ATL3): c.1434A> G (p.Gly478=) single nucleotide variant Benign rs189119869 GRCh38 Chromosome 11, 63631145: 63631145
31 ATL3 NM_015459.4(ATL3): c.853A> G (p.Ile285Val) single nucleotide variant Uncertain significance rs1031320296 GRCh38 Chromosome 11, 63636332: 63636332
32 ATL3 NM_015459.4(ATL3): c.853A> G (p.Ile285Val) single nucleotide variant Uncertain significance rs1031320296 GRCh37 Chromosome 11, 63403804: 63403804
33 ATL3 NM_015459.4(ATL3): c.796C> A (p.Pro266Thr) single nucleotide variant Uncertain significance rs1052779395 GRCh38 Chromosome 11, 63643411: 63643411
34 ATL3 NM_015459.4(ATL3): c.796C> A (p.Pro266Thr) single nucleotide variant Uncertain significance rs1052779395 GRCh37 Chromosome 11, 63410883: 63410883
35 ATL3 NM_015459.4(ATL3): c.712G> A (p.Val238Met) single nucleotide variant Uncertain significance rs745535328 GRCh38 Chromosome 11, 63643495: 63643495
36 ATL3 NM_015459.4(ATL3): c.712G> A (p.Val238Met) single nucleotide variant Uncertain significance rs745535328 GRCh37 Chromosome 11, 63410967: 63410967
37 ATL3 NM_015459.4(ATL3): c.581G> A (p.Arg194His) single nucleotide variant Uncertain significance rs750850786 GRCh38 Chromosome 11, 63646544: 63646544
38 ATL3 NM_015459.4(ATL3): c.581G> A (p.Arg194His) single nucleotide variant Uncertain significance rs750850786 GRCh37 Chromosome 11, 63414016: 63414016
39 ATL3 NM_015459.4(ATL3): c.1522G> A (p.Ala508Thr) single nucleotide variant Uncertain significance rs183951324 GRCh38 Chromosome 11, 63631057: 63631057
40 ATL3 NM_015459.4(ATL3): c.1522G> A (p.Ala508Thr) single nucleotide variant Uncertain significance rs183951324 GRCh37 Chromosome 11, 63398529: 63398529
41 ATL3 NM_015459.4(ATL3): c.1451T> C (p.Leu484Pro) single nucleotide variant Uncertain significance rs773136140 GRCh38 Chromosome 11, 63631128: 63631128
42 ATL3 NM_015459.4(ATL3): c.1451T> C (p.Leu484Pro) single nucleotide variant Uncertain significance rs773136140 GRCh37 Chromosome 11, 63398600: 63398600
43 ATL3 NM_015459.4(ATL3): c.5_7delTGTinsCTG (p.Leu2_Ser3delinsSerAla) indel Uncertain significance rs1555059203 GRCh38 Chromosome 11, 63671329: 63671331
44 ATL3 NM_015459.4(ATL3): c.5_7delTGTinsCTG (p.Leu2_Ser3delinsSerAla) indel Uncertain significance rs1555059203 GRCh37 Chromosome 11, 63438801: 63438803
45 ATL3 NM_015459.4(ATL3): c.1609G> A (p.Asp537Asn) single nucleotide variant Uncertain significance rs201433550 GRCh37 Chromosome 11, 63396808: 63396808
46 ATL3 NM_015459.4(ATL3): c.1609G> A (p.Asp537Asn) single nucleotide variant Uncertain significance rs201433550 GRCh38 Chromosome 11, 63629336: 63629336
47 ATL3 NM_015459.4(ATL3): c.1587A> G (p.Ala529=) single nucleotide variant Likely benign rs764146494 GRCh37 Chromosome 11, 63396830: 63396830
48 ATL3 NM_015459.4(ATL3): c.1587A> G (p.Ala529=) single nucleotide variant Likely benign rs764146494 GRCh38 Chromosome 11, 63629358: 63629358
49 ATL3 NM_015459.4(ATL3): c.1329C> G (p.Thr443=) single nucleotide variant Benign rs201059472 GRCh37 Chromosome 11, 63398722: 63398722
50 ATL3 NM_015459.4(ATL3): c.1329C> G (p.Thr443=) single nucleotide variant Benign rs201059472 GRCh38 Chromosome 11, 63631250: 63631250

Expression for Neuropathy, Hereditary Sensory, Type if

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