OTCD
MCID: ORN008
MIFTS: 58

Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to (OTCD)

Categories: Blood diseases, Genetic diseases, Metabolic diseases, Neuronal diseases, Rare diseases

Aliases & Classifications for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

MalaCards integrated aliases for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

Name: Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to 58 39
Ornithine Carbamoyltransferase Deficiency 58 39 12 25 54 60 76 30 6 15 41 17 74
Ornithine Transcarbamylase Deficiency 58 12 25 54 26 60 76 38 13 56
Otc Deficiency 58 25 54 60 76
Ornithine Carbamoyltransferase Deficiency Disease 26 56 45
Otcd 54 76
Hyperammonemia Due to Ornithine Carbamoyltransferase Deficiency 76
Deficiency of Citrulline Phosphorylase 12
Ornithine Transcarbamylase 13
Oct Deficiency 60

Characteristics:

Orphanet epidemiological data:

60
ornithine transcarbamylase deficiency
Inheritance: X-linked recessive; Prevalence: 1-9/100000 (Europe),1-9/100000 (Italy),1-9/100000 (Australia),1-9/100000 (Finland),1-9/1000000 (Canada),1-9/100000 (United States),1-9/100000 (Worldwide); Age of onset: All ages,Neonatal; Age of death: any age,infantile;

OMIM:

58
Miscellaneous:
two types - lethal neonatal and less severe, late onset
clinical spectrum in males ranges from lethal neonatal onset to milder forms with first recognized episode in late childhood or even in adulthood
carrier females may present with postpartum hyperammonemia
some carrier females have episodes of significant hyperammonemia in infancy or childhood
prevalence of 1 in 40,000 to 1 in 80,000

Inheritance:
x-linked recessive


HPO:

33
ornithine transcarbamylase deficiency, hyperammonemia due to:
Inheritance x-linked recessive inheritance


GeneReviews:

25
Penetrance Penetrance for otc deficiency is complete in hemizygous males...

Classifications:



Summaries for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

NIH Rare Diseases : 54 Ornithine transcarbamylase (OTC) deficiency is a genetic disease that causes too much ammonia to accumulate in the blood (hyperammonemia). Ammonia is toxic when levels are too high and especially affects the nervous system. Severe OTC deficiency (the early-onset form) typically affects males (and rarely females) and causes symptoms in the newborn period or early childhood. Signs and symptoms of this form may include lack of energy and appetite, poorly-controlled breathing rate and body temperature, unusual body movements, seizures, or coma. When not treated, the disease can lead to development delay, intellectual disability, and liver damage. Less frequently, symptoms of OTC deficiency begin later in life (the late-onset form) and are less severe. This form occurs in both males and females. Symptoms of this form may include episodes of delirium, erratic behavior, a reduced level of consciousness, headaches, vomiting, and seizures. OTC is caused by mutations in the OTC gene and inheritance is X-linked. Treatment involves removing protein from the diet, taking certain medications, and having hemodialysis if needed for extremely high blood ammonia levels.

MalaCards based summary : Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to, also known as ornithine carbamoyltransferase deficiency, is related to carbamoyl phosphate synthetase i deficiency, hyperammonemia due to and argininemia, and has symptoms including seizures, vomiting and lethargy. An important gene associated with Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to is OTC (Ornithine Carbamoyltransferase), and among its related pathways/superpathways are Arginine biosynthesis and Metabolism. The drugs carbamide peroxide and Acetohydroxamic acid have been mentioned in the context of this disorder. Affiliated tissues include Liver, liver and brain, and related phenotypes are splenomegaly and aminoaciduria

Disease Ontology : 12 An urea cycle disorder that involves a mutated and ineffective form of the enzyme ornithine transcarbamylase.

Genetics Home Reference : 26 Ornithine transcarbamylase deficiency is an inherited disorder that causes ammonia to accumulate in the blood. Ammonia, which is formed when proteins are broken down in the body, is toxic if the levels become too high. The nervous system is especially sensitive to the effects of excess ammonia.

OMIM : 58 Ornithine transcarbamylase deficiency is an X-linked inborn error of metabolism of the urea cycle which causes hyperammonemia. The disorder is treatable with supplemental dietary arginine and low protein diet. Urea cycle disorders are characterized by the triad of hyperammonemia, encephalopathy, and respiratory alkalosis. Five disorders involving different defects in the biosynthesis of the enzymes of the urea cycle have been described: OTC deficiency, carbamyl phosphate synthetase deficiency (237300), argininosuccinate synthetase deficiency, or citrullinemia (215700), argininosuccinate lyase deficiency (207900), and arginase deficiency (207800). (311250)

UniProtKB/Swiss-Prot : 76 Ornithine carbamoyltransferase deficiency: An X-linked disorder of the urea cycle which causes a form of hyperammonemia. Mutations with no residual enzyme activity are always expressed in hemizygote males by a very severe neonatal hyperammonemic coma that generally proves to be fatal. Heterozygous females are either asymptomatic or express orotic aciduria spontaneously or after protein intake. The disorder is treatable with supplemental dietary arginine and low protein diet. The arbitrary classification of patients into the 'neonatal' group (clinical hyperammonemia in the first few days of life) and 'late' onset (clinical presentation after the neonatal period) has been used to differentiate severe from mild forms.

Wikipedia : 77 Ornithine transcarbamylase deficiency is the most common urea cycle disorder in humans. It is an... more...

GeneReviews: NBK154378

Related Diseases for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Diseases related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to via text searches within MalaCards or GeneCards Suite gene sharing:

(show top 50) (show all 65)
# Related Disease Score Top Affiliating Genes
1 carbamoyl phosphate synthetase i deficiency, hyperammonemia due to 31.3 ASS1 CPS1 NAGS OTC
2 argininemia 31.0 ASL ASS1 CPS1 NAGS OTC
3 argininosuccinic aciduria 30.7 ASL ASS1 NAGS OTC SLC25A13
4 reye syndrome 30.6 ASS1 OTC
5 brain edema 30.2 OTC SLC25A13
6 orotic aciduria 29.6 ASL ASS1 DPYD OTC
7 propionic acidemia 28.8 ASS1 NAGS OTC SLC25A13
8 infantile liver failure syndrome 1 10.4
9 hepatocellular carcinoma 10.3
10 acrodermatitis enteropathica, zinc-deficiency type 10.3
11 acute liver failure 10.3
12 chronic granulomatous disease 10.3
13 acrodermatitis 10.3
14 fibrolamellar carcinoma 10.3
15 enteropathica 10.3
16 alzheimer disease 10.2
17 attention deficit-hyperactivity disorder 10.2
18 alkaptonuria 10.2
19 ocular motor apraxia 10.2
20 pol iii-related leukodystrophies 10.2
21 choreatic disease 10.2
22 acute pancreatitis 10.2
23 pancreatitis 10.2
24 encephalopathy 10.2
25 lipoid congenital adrenal hyperplasia 10.1
26 leigh syndrome 10.1
27 retinitis pigmentosa 10.1
28 wilson disease 10.1
29 muscular dystrophy, duchenne type 10.1
30 rett syndrome 10.1
31 yemenite deaf-blind hypopigmentation syndrome 10.1
32 leber congenital amaurosis 4 10.1
33 diabetes mellitus 10.1
34 hepatitis 10.1
35 thrombosis 10.1
36 cortical blindness 10.1
37 status epilepticus 10.1
38 encephalomalacia 10.1
39 retinitis 10.1
40 adenosine deaminase deficiency 10.1
41 influenza 10.1
42 subacute delirium 10.1
43 intracranial hypertension 10.1
44 encephalitis 10.1
45 muscular dystrophy 10.1
46 anton's syndrome 10.1
47 xp22.3 microdeletion syndrome 10.1
48 polycythemia vera 10.1
49 biotin deficiency 10.1
50 hepatoblastoma 10.1

Graphical network of the top 20 diseases related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:



Diseases related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Symptoms & Phenotypes for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Human phenotypes related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

60 33 (show all 23)
# Description HPO Frequency Orphanet Frequency HPO Source Accession
1 splenomegaly 60 33 hallmark (90%) Very frequent (99-80%) HP:0001744
2 aminoaciduria 60 33 hallmark (90%) Very frequent (99-80%) HP:0003355
3 hypoglycemia 60 33 hallmark (90%) Very frequent (99-80%) HP:0001943
4 hepatic failure 60 33 hallmark (90%) Very frequent (99-80%) HP:0001399
5 hyperammonemia 60 33 hallmark (90%) Very frequent (99-80%) HP:0001987
6 pyloric stenosis 60 33 hallmark (90%) Very frequent (99-80%) HP:0002021
7 stroke 33 occasional (7.5%) HP:0001297
8 intellectual disability 33 HP:0001249
9 seizures 33 HP:0001250
10 ataxia 33 HP:0001251
11 failure to thrive 33 HP:0001508
12 global developmental delay 33 HP:0001263
13 vomiting 33 HP:0002013
14 irritability 33 HP:0000737
15 coma 33 HP:0001259
16 lethargy 33 HP:0001254
17 episodic ammonia intoxication 33 HP:0001951
18 hyperglutaminemia 33 HP:0003217
19 protein avoidance 33 HP:0002038
20 respiratory alkalosis 33 HP:0001950
21 episodic ataxia 33 HP:0002131
22 low plasma citrulline 33 HP:0003572
23 cerebral edema 33 HP:0002181

Symptoms via clinical synopsis from OMIM:

58
Neurologic Central Nervous System:
seizures
coma
lethargy
episodic ataxia
cerebral edema
more
Abdomen Gastrointestinal:
vomiting
protein avoidance

Laboratory Abnormalities:
hyperammonemia
low plasma citrulline
high plasma glutamine
low plasma arginine
high plasma asparagine
more
Growth Other:
failure to thrive

Neurologic Behavioral Psychiatric Manifestations:
irritability

Metabolic Features:
episodic ammonia intoxication
respiratory alkalosis

Clinical features from OMIM:

311250

UMLS symptoms related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:


seizures, vomiting, lethargy

MGI Mouse Phenotypes related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

47
# Description MGI Source Accession Score Top Affiliating Genes
1 behavior/neurological MP:0005386 9.1 ASL ASS1 NAGS OTC SLC25A13 TSPAN7

Drugs & Therapeutics for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Drugs for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to (from DrugBank, HMDB, Dgidb, PharmGKB, IUPHAR, NovoSeek, BitterDB):

(show all 7)
# Name Status Phase Clinical Trials Cas Number PubChem Id
1
carbamide peroxide Approved Phase 2, Phase 3,Phase 1 124-43-6
2
Acetohydroxamic acid Approved Phase 1, Phase 2 546-88-3 1990
3
Ornithine Approved, Nutraceutical Phase 2,Phase 1 70-26-8, 3184-13-2 6262
4
Glutamic Acid Approved, Nutraceutical Phase 2 56-86-0 33032
5 Liver Extracts Phase 2,Phase 1
6 Hematinics Phase 2
7 Vaccines

Interventional clinical trials:

(show all 17)
# Name Status NCT ID Phase Drugs
1 N-Carbamylglutamate (Carbaglu) In The Treatment Of Hyperammonemia Completed NCT00843921 Phase 2, Phase 3 N-carbamylglutamate
2 Human Heterologous Liver Cells for Infusion in Children With Urea Cycle Disorders Completed NCT00718627 Phase 2
3 Pilot Study For Hypothermia Treatment In Hyperammonemic Encephalopathy In Neonates And Very Young Infants Completed NCT01624311 Phase 2
4 Safety and Dose-Finding Study of DTX301 (scAAV8OTC) in Adults With Late-Onset OTC Deficiency Recruiting NCT02991144 Phase 1, Phase 2
5 Short-Term Outcome of N-Carbamylglutamate in the Treatment of Acute Hyperammonemia Active, not recruiting NCT01599286 Phase 2 Carbaglu;Placebo;Standard of Care Treatment
6 Safety, Tolerability and PK/PD Evaluation of Intravenous Administration of MRT5201 in Patients With OTC Deficiency Not yet recruiting NCT03767270 Phase 1, Phase 2
7 UNLOCKED: A Phase 2, Open-label Trial With KB195 in Subjects With a Urea Cycle Disorder Not yet recruiting NCT03933410 Phase 2 KB195
8 Manipulating the Gut Microbiome Study Terminated NCT03181828 Phase 1, Phase 2 Acetohydroxamic Acid Oral Tablet [Lithostat]
9 Study of Treatment and Metabolism in Patients With Urea Cycle Disorders Unknown status NCT00004307 Phase 1
10 Hepatocyte Transplantation for Liver Based Metabolic Disorders Suspended NCT01345578 Phase 1 human hepatocyte transplantation
11 Phase I Study of Adenoviral Vector Mediated Gene Transfer for Ornithine Transcarbamylase in Adults With Partial Ornithine Transcarbamylase Deficiency Terminated NCT00004498 Phase 1
12 Phase I Pilot Study of Liver-Directed Gene Therapy for Partial Ornithine Transcarbamylase Deficiency Terminated NCT00004386 Phase 1
13 Investigation of Brain Nitrogen in Partial Ornithine Transcarbamylase Deficiency (OTCD) Using 1 H MRS, DTI, and fMRI Completed NCT01569568
14 Neurologic Injuries in Adults With Urea Cycle Disorders Completed NCT00472732
15 Neuroimaging and Neuropsychological Outcomes in Urea Cycle Disorders Recruiting NCT02935283
16 Long Term Follow Up to Evaluate DTX301 in Adults With Late-Onset OTC Deficiency Enrolling by invitation NCT03636438
17 The NIH UNI Study: Urea Cycle Disorders, Nutrition and Immunity Terminated NCT01421888

Search NIH Clinical Center for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Cell-based therapeutics:


LifeMap Discovery
Data from LifeMap, the Embryonic Development and Stem Cells Database
Stem-cell-based therapeutic approaches for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:
Hepatocyte transplantation for treatment of liver disorders
Promethera HepaStem, human adult liver progenitor cells for liver diseases
Embryonic/Adult Cultured Cells Related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:
Hepatocytes PMIDs: 15239608 12777539 9580649 22789058 22167636
Adult liver progenitor cells PMIDs: 22525602 23211283 19091822 24142276 22900053

Cochrane evidence based reviews: ornithine carbamoyltransferase deficiency disease

Genetic Tests for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Genetic tests related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

# Genetic test Affiliating Genes
1 Ornithine Carbamoyltransferase Deficiency 30 OTC

Anatomical Context for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

MalaCards organs/tissues related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

42
Liver, Brain, Testes
LifeMap Discovery
Data from LifeMap, the Embryonic Development and Stem Cells Database

Cells/anatomical compartments in embryo or adult related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:
# Tissue Anatomical CompartmentCell Relevance
1 Liver Liver Lobule Hepatocytes Potential therapeutic candidate

Publications for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Articles related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

(show top 50) (show all 59)
# Title Authors Year
1
Activity of the liver enzyme ornithine carbamoyltransferase (OTC) in blood: LC-MS/MS assay for non-invasive diagnosis of ornithine carbamoyltransferase deficiency. ( 28107167 )
2017
2
Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics. ( 27854360 )
2017
3
Liver engraftment and repopulation by in vitro expanded adult derived human liver stem cells in a child with ornithine carbamoyltransferase deficiency. ( 24142276 )
2014
4
A female carrier of ornithine carbamoyltransferase deficiency masquerading as attention deficit-hyperactivity disorder. ( 24199608 )
2014
5
Four-decade-old mummified umbilical tissue making retrospective molecular diagnosis of ornithine carbamoyltransferase deficiency. ( 25123069 )
2014
6
Late-onset ornithine carbamoyltransferase deficiency accompanying acute pancreatitis and hyperammonemia. ( 24073003 )
2013
7
Simultaneous detection of diagnostic biomarkers of alkaptonuria, ornithine carbamoyltransferase deficiency, and neuroblastoma disease by high-performance liquid chromatography/tandem mass spectrometry. ( 23085206 )
2013
8
Ornithine carbamoyltransferase deficiency: molecular characterization of 29 families. ( 23278509 )
2013
9
Hyperammonemia in a patient with late-onset ornithine carbamoyltransferase deficiency. ( 22563224 )
2012
10
Disruption of OTC promoter-enhancer interaction in a patient with symptoms of ornithine carbamoyltransferase deficiency. ( 20127982 )
2010
11
Gene symbol: OTC. Disease: ornithine carbamoyltransferase deficiency. ( 12974275 )
2003
12
Gene symbol: OTC. Disease: ornithine carbamoyltransferase deficiency. ( 12974280 )
2003
13
Neurological outcome of patients with ornithine carbamoyltransferase deficiency. ( 11806886 )
2002
14
Mutations and polymorphisms in the human ornithine transcarbamylase gene. ( 11793468 )
2002
15
Ornithine carbamoyltransferase deficiency. ( 11124797 )
2001
16
Ornithine carbamoyltransferase deficiency: improved sensitivity of testing for protein tolerance in the diagnosis of heterozygotes. ( 11286382 )
2001
17
Intra-day variations in urinary pyrimidines in ornithine carbamoyltransferase deficiency and healthy individuals. ( 11432394 )
2001
18
Pitfalls in the detection of heterozygosity by allopurinol in a variant form of ornithine carbamoyltransferase deficiency. ( 11596657 )
2001
19
Plasma glutamine and ammonia concentrations in ornithine carbamoyltransferase deficiency and citrullinaemia. ( 11804205 )
2001
20
Late-onset ornithine transcarbamylase deficiency in two families with different mutations in the same codon. ( 11260212 )
2001
21
The clinically variable R40H mutant ornithine carbamoyltransferase shows cytosolic degradation of the precursor protein in CHO cells. ( 11768581 )
2001
22
Influence of dose and age on the response of the allopurinol test for ornithine carbamoyltransferase deficiency in control infants. ( 11117427 )
2000
23
Mutation detection in 65 families with a possible diagnosis of ornithine carbamoyltransferase deficiency including 14 novel mutations. ( 11117428 )
2000
24
Ornithine carbamoyltransferase deficiency presenting with chorea in a female. ( 11196111 )
2000
25
Prenatal molecular diagnosis of severe ornithine carbamoyltransferase deficiency due to a novel mutation, E181G. ( 10070622 )
1999
26
Optimization of allopurinol challenge: sample purification, protein intake control, and the use of orotidine response as a discriminative variable improve performance of the test for diagnosing ornithine carbamoyltransferase deficiency. ( 10388475 )
1999
27
Ornithine carbamoyltransferase deficiency: unusual clinical findings and novel mutation. ( 10399103 )
1999
28
Maternal gonadal mosaicism causing ornithine transcarbamylase deficiency. ( 10405441 )
1999
29
Symptomatic ornithine carbamoyltransferase deficiency (point mutation H202P) with normal in vitro activity. ( 9501271 )
1998
30
Benign persistent orotic aciduria and the possibility of misdiagnosis of ornithine carbamoyltransferase deficiency. ( 9266354 )
1997
31
Familial lethal inheritance of a mutated paternal gene in females causing X-linked ornithine transcarbamylase (OTC) deficiency. ( 9056557 )
1997
32
Ornithine transcarbamylase deficiency: ten new mutations and high proportion of de novo mutations in heterozygous females. ( 9143919 )
1997
33
Phenotypic variability in male patients carrying the mutant ornithine transcarbamylase (OTC) allele, Arg40His, ranging from a child with an unfavourable prognosis to an asymptomatic older adult. ( 8863155 )
1996
34
The sparse fur mouse as a model for gene therapy in ornithine carbamoyltransferase deficiency. ( 8750014 )
1995
35
Demonstration of the spf-ash mutation in Spanish patients with ornithine transcarbamylase deficiency of moderate severity. ( 7860064 )
1995
36
Sudden onset of ornithine carbamoyltransferase deficiency after aspirin ingestion. ( 8295421 )
1993
37
Mutations and polymorphisms in the human ornithine transcarbamylase gene. ( 8364586 )
1993
38
Screening for gene deletions and known mutations in 13 patients with ornithine transcarbamylase deficiency. ( 1627356 )
1992
39
Site specific screening for point mutations in ornithine transcarbamylase deficiency. ( 1353535 )
1992
40
Valproate-induced lethal hyperammonaemic coma in a carrier of ornithine carbamoyltransferase deficiency. ( 1779634 )
1991
41
Ornithine carbamoyltransferase deficiency with subnormal enzyme activity. ( 1779638 )
1991
42
Arginine 109 to glutamine mutation in a girl with ornithine carbamoyl transferase deficiency. ( 1757964 )
1991
43
Identification of RNA splicing errors resulting in human ornithine transcarbamylase deficiency. ( 2035531 )
1991
44
Fatal hyperammonemia resulting from a C-to-T mutation at a MspI site of the ornithine transcarbamylase gene. ( 1721894 )
1991
45
Rett's syndrome and ornithine carbamoyltransferase deficiency. ( 2122091 )
1990
46
Sporadic late onset ornithine transcarbamylase deficiency in a boy with somatic mosaicism for an intragenic deletion. ( 2208768 )
1990
47
Use of denaturing gradient gel electrophoresis for detection of mutation and prospective diagnosis in late onset ornithine transcarbamylase deficiency. ( 2347583 )
1990
48
Ornithine carbamoyltransferase deficiency. A new variant with subnormal enzyme activity. ( 2612006 )
1989
49
False positive results from the alanine loading test for ornithine carbamoyltransferase deficiency heterozygosity. ( 2795358 )
1989
50
An arginine to glutamine mutation in residue 109 of human ornithine transcarbamylase completely abolishes enzymatic activity in Cos1 cells. ( 2556444 )
1989

Variations for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

UniProtKB/Swiss-Prot genetic disease variations for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

76 (show top 50) (show all 111)
# Symbol AA change Variation ID SNP ID
1 OTC p.Arg26Gln VAR_004843 rs68031618
2 OTC p.Gly39Cys VAR_004844 rs72554306
3 OTC p.Arg40Cys VAR_004845 rs72554307
4 OTC p.Arg40His VAR_004846 rs72554308
5 OTC p.Thr44Ile VAR_004848 rs72554310
6 OTC p.Leu45Pro VAR_004849 rs72554312
7 OTC p.Leu45Val VAR_004850 rs72554311
8 OTC p.Asn47Ile VAR_004852 rs67939655
9 OTC p.Gly50Arg VAR_004853 rs67486158
10 OTC p.Tyr55Asp VAR_004854 rs72554319
11 OTC p.Met56Thr VAR_004855 rs72554320
12 OTC p.Ser60Leu VAR_004856 rs72554323
13 OTC p.Leu63Pro VAR_004857 rs72554324
14 OTC p.Gly79Glu VAR_004858 rs72554331
15 OTC p.Gly83Asp VAR_004860 rs72554337
16 OTC p.Gly83Arg VAR_004861 rs72554336
17 OTC p.Glu87Lys VAR_004862 rs72554338
18 OTC p.Lys88Asn VAR_004863 rs72554339
19 OTC p.Ser90Arg VAR_004864 rs72554342
20 OTC p.Arg92Gln VAR_004865 rs66550389
21 OTC p.Thr93Ala VAR_004866 rs72554344
22 OTC p.Arg94Thr VAR_004867 rs72554345
23 OTC p.Gly100Asp VAR_004868 rs72554349
24 OTC p.Ala102Glu VAR_004870 rs72554350
25 OTC p.His117Leu VAR_004872 rs66539573
26 OTC p.His117Arg VAR_004873 rs66539573
27 OTC p.Thr125Met VAR_004874 rs72554356
28 OTC p.Asp126Gly VAR_004875 rs72554358
29 OTC p.Arg129His VAR_004876 rs66656800
30 OTC p.Leu139Ser VAR_004877 rs72556259
31 OTC p.Arg141Pro VAR_004878 rs68026851
32 OTC p.Arg141Gln VAR_004879 rs68026851
33 OTC p.Leu148Phe VAR_004880 rs66741318
34 OTC p.Ile159Thr VAR_004881 rs72556269
35 OTC p.Asn161Ser VAR_004882 rs72556271
36 OTC p.Gly162Arg VAR_004883 rs66626662
37 OTC p.His168Gln VAR_004884 rs72556276
38 OTC p.His168Arg VAR_004885 rs66867430
39 OTC p.Ile172Met VAR_004886 rs72556280
40 OTC p.Ala174Pro VAR_004887 rs72556281
41 OTC p.Asp175Val VAR_004888 rs68033093
42 OTC p.Tyr176Cys VAR_004889 rs72556283
43 OTC p.Thr178Met VAR_004890 rs72556284
44 OTC p.Gln180His VAR_004892 rs72556287
45 OTC p.Glu181Gly VAR_004893 rs72556290
46 OTC p.His182Leu VAR_004894 rs72556291
47 OTC p.Tyr183Cys VAR_004895 rs72556293
48 OTC p.Tyr183Asp VAR_004896 rs72556292
49 OTC p.Gly188Arg VAR_004897 rs72556294
50 OTC p.Ser192Arg VAR_004898 rs72556298

ClinVar genetic disease variations for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to:

6 (show top 50) (show all 153)
# Gene Variation Type Significance SNP ID Assembly Location
1 OTC OTC, DEL deletion Pathogenic
2 OTC NM_000531.5(OTC): c.422G> A (p.Arg141Gln) single nucleotide variant Pathogenic rs68026851 GRCh37 Chromosome X, 38260563: 38260563
3 OTC NM_000531.5(OTC): c.422G> A (p.Arg141Gln) single nucleotide variant Pathogenic rs68026851 GRCh38 Chromosome X, 38401310: 38401310
4 OTC NM_000531.5(OTC): c.421C> T (p.Arg141Ter) single nucleotide variant Pathogenic rs67960011 GRCh37 Chromosome X, 38260562: 38260562
5 OTC NM_000531.5(OTC): c.421C> T (p.Arg141Ter) single nucleotide variant Pathogenic rs67960011 GRCh38 Chromosome X, 38401309: 38401309
6 OTC NM_000531.5(OTC): c.332T> C (p.Leu111Pro) single nucleotide variant Pathogenic rs1800324 GRCh37 Chromosome X, 38240628: 38240628
7 OTC NM_000531.5(OTC): c.332T> C (p.Leu111Pro) single nucleotide variant Pathogenic rs1800324 GRCh38 Chromosome X, 38381375: 38381375
8 OTC NM_000531.5(OTC): c.646C> G (p.Gln216Glu) single nucleotide variant Pathogenic rs72558423 GRCh37 Chromosome X, 38262976: 38262976
9 OTC NM_000531.5(OTC): c.646C> G (p.Gln216Glu) single nucleotide variant Pathogenic rs72558423 GRCh38 Chromosome X, 38403723: 38403723
10 OTC NM_000531.5(OTC): c.460G> T (p.Glu154Ter) single nucleotide variant Pathogenic rs72556267 GRCh37 Chromosome X, 38260601: 38260601
11 OTC NM_000531.5(OTC): c.460G> T (p.Glu154Ter) single nucleotide variant Pathogenic rs72556267 GRCh38 Chromosome X, 38401348: 38401348
12 OTC NM_000531.5(OTC): c.134T> C (p.Leu45Pro) single nucleotide variant Pathogenic rs72554312 GRCh37 Chromosome X, 38226600: 38226600
13 OTC NM_000531.5(OTC): c.134T> C (p.Leu45Pro) single nucleotide variant Pathogenic rs72554312 GRCh38 Chromosome X, 38367347: 38367347
14 OTC NM_000531.5(OTC): c.77G> A (p.Arg26Gln) single nucleotide variant Pathogenic rs68031618 GRCh37 Chromosome X, 38212026: 38212026
15 OTC NM_000531.5(OTC): c.77G> A (p.Arg26Gln) single nucleotide variant Pathogenic rs68031618 GRCh38 Chromosome X, 38352773: 38352773
16 OTC NM_000531.5(OTC): c.137A> G (p.Lys46Arg) single nucleotide variant Benign rs1800321 GRCh37 Chromosome X, 38226603: 38226603
17 OTC NM_000531.5(OTC): c.137A> G (p.Lys46Arg) single nucleotide variant Benign rs1800321 GRCh38 Chromosome X, 38367350: 38367350
18 OTC NM_000531.5(OTC): c.717+2T> C single nucleotide variant Pathogenic rs72558431 GRCh37 Chromosome X, 38268050: 38268050
19 OTC NM_000531.5(OTC): c.717+2T> C single nucleotide variant Pathogenic rs72558431 GRCh38 Chromosome X, 38408797: 38408797
20 OTC NM_000531.5(OTC): c.387-2A> T single nucleotide variant Pathogenic rs66556380 GRCh37 Chromosome X, 38260526: 38260526
21 OTC NM_000531.5(OTC): c.387-2A> T single nucleotide variant Pathogenic rs66556380 GRCh38 Chromosome X, 38401273: 38401273
22 OTC NM_000531.5(OTC): c.829C> T (p.Arg277Trp) single nucleotide variant Pathogenic rs72558454 GRCh37 Chromosome X, 38268240: 38268240
23 OTC NM_000531.5(OTC): c.829C> T (p.Arg277Trp) single nucleotide variant Pathogenic rs72558454 GRCh38 Chromosome X, 38408987: 38408987
24 OTC NM_000531.5(OTC): c.674C> T (p.Pro225Leu) single nucleotide variant Pathogenic rs67120076 GRCh37 Chromosome X, 38268005: 38268005
25 OTC NM_000531.5(OTC): c.674C> T (p.Pro225Leu) single nucleotide variant Pathogenic rs67120076 GRCh38 Chromosome X, 38408752: 38408752
26 OTC NM_000531.5(OTC): c.259G> A (p.Glu87Lys) single nucleotide variant Pathogenic rs72554338 GRCh37 Chromosome X, 38229091: 38229091
27 OTC NM_000531.5(OTC): c.259G> A (p.Glu87Lys) single nucleotide variant Pathogenic rs72554338 GRCh38 Chromosome X, 38369838: 38369838
28 OTC NM_000531.5(OTC): c.148G> T (p.Gly50Ter) single nucleotide variant Pathogenic rs67486158 GRCh37 Chromosome X, 38226614: 38226614
29 OTC NM_000531.5(OTC): c.148G> T (p.Gly50Ter) single nucleotide variant Pathogenic rs67486158 GRCh38 Chromosome X, 38367361: 38367361
30 OTC NM_000531.5(OTC): c.484G> A (p.Gly162Arg) single nucleotide variant Pathogenic rs66626662 GRCh37 Chromosome X, 38260625: 38260625
31 OTC NM_000531.5(OTC): c.484G> A (p.Gly162Arg) single nucleotide variant Pathogenic rs66626662 GRCh38 Chromosome X, 38401372: 38401372
32 OTC NM_000531.5(OTC): c.236G> A (p.Gly79Glu) single nucleotide variant Pathogenic rs72554331 GRCh37 Chromosome X, 38229068: 38229068
33 OTC NM_000531.5(OTC): c.236G> A (p.Gly79Glu) single nucleotide variant Pathogenic rs72554331 GRCh38 Chromosome X, 38369815: 38369815
34 OTC NM_000531.5(OTC): c.281G> C (p.Arg94Thr) single nucleotide variant Pathogenic rs72554345 GRCh37 Chromosome X, 38229113: 38229113
35 OTC NM_000531.5(OTC): c.281G> C (p.Arg94Thr) single nucleotide variant Pathogenic rs72554345 GRCh38 Chromosome X, 38369860: 38369860
36 OTC NM_000531.5(OTC): c.912G> T (p.Leu304Phe) single nucleotide variant Pathogenic rs72558465 GRCh37 Chromosome X, 38271159: 38271159
37 OTC NM_000531.5(OTC): c.912G> T (p.Leu304Phe) single nucleotide variant Pathogenic rs72558465 GRCh38 Chromosome X, 38411906: 38411906
38 OTC NM_000531.5(OTC): c.1033T> G (p.Tyr345Asp) single nucleotide variant Pathogenic rs66469337 GRCh37 Chromosome X, 38280303: 38280303
39 OTC NM_000531.5(OTC): c.1033T> G (p.Tyr345Asp) single nucleotide variant Pathogenic rs66469337 GRCh38 Chromosome X, 38421050: 38421050
40 OTC NM_000531.5(OTC): c.386G> A (p.Arg129His) single nucleotide variant Pathogenic rs66656800 GRCh37 Chromosome X, 38240682: 38240682
41 OTC NM_000531.5(OTC): c.386G> A (p.Arg129His) single nucleotide variant Pathogenic rs66656800 GRCh38 Chromosome X, 38381429: 38381429
42 OTC NM_000531.5(OTC): c.444G> C (p.Leu148Phe) single nucleotide variant Pathogenic rs66741318 GRCh37 Chromosome X, 38260585: 38260585
43 OTC NM_000531.5(OTC): c.444G> C (p.Leu148Phe) single nucleotide variant Pathogenic rs66741318 GRCh38 Chromosome X, 38401332: 38401332
44 OTC NM_000531.5(OTC): c.617T> G (p.Met206Arg) single nucleotide variant Pathogenic rs72558412 GRCh37 Chromosome X, 38262947: 38262947
45 OTC NM_000531.5(OTC): c.617T> G (p.Met206Arg) single nucleotide variant Pathogenic rs72558412 GRCh38 Chromosome X, 38403694: 38403694
46 OTC NM_000531.5(OTC): c.118C> T (p.Arg40Cys) single nucleotide variant Likely pathogenic rs72554307 GRCh37 Chromosome X, 38226584: 38226584
47 OTC NM_000531.5(OTC): c.118C> T (p.Arg40Cys) single nucleotide variant Likely pathogenic rs72554307 GRCh38 Chromosome X, 38367331: 38367331
48 OTC NM_000531.5(OTC): c.119G> A (p.Arg40His) single nucleotide variant Pathogenic rs72554308 GRCh37 Chromosome X, 38226585: 38226585
49 OTC NM_000531.5(OTC): c.119G> A (p.Arg40His) single nucleotide variant Pathogenic rs72554308 GRCh38 Chromosome X, 38367332: 38367332
50 OTC NM_000531.5(OTC): c.238A> G (p.Lys80Glu) single nucleotide variant Pathogenic rs72554332 GRCh37 Chromosome X, 38229070: 38229070

Copy number variations for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to from CNVD:

7
# CNVD ID Chromosom Start End Type Gene Symbol CNVD Disease
1 262149 X 31500000 37500000 Copy number OTC Ornithine transcarbamylase deficiency

Expression for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Search GEO for disease gene expression data for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to.

Pathways for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Pathways related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to according to KEGG:

38
# Name Kegg Source Accession
1 Arginine biosynthesis hsa00220

Pathways related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to according to GeneCards Suite gene sharing:

# Super pathways Score Top Affiliating Genes
1
Show member pathways
13.59 ASL ASS1 CPS1 DPYD NAGS OTC
2
Show member pathways
13.24 ASL ASS1 CPS1 NAGS OTC
3
Show member pathways
11.88 ASL ASS1 CPS1 NAGS OTC
4 11.46 ASS1 CPS1 OTC
5 10.99 ASL ASS1 CPS1
6
Show member pathways
10.77 ASL ASS1 CPS1 NAGS OTC
7
Show member pathways
10.48 ASL ASS1
8
Show member pathways
10.4 ASL ASS1 CPS1 NAGS OTC

GO Terms for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

Cellular components related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 mitochondrial inner membrane GO:0005743 9.33 CPS1 OTC SLC25A13
2 mitochondrial matrix GO:0005759 9.13 CPS1 NAGS OTC
3 mitochondrion GO:0005739 9.02 ASS1 CPS1 NAGS OTC SLC25A13

Biological processes related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to according to GeneCards Suite gene sharing:

(show all 20)
# Name GO ID Score Top Affiliating Genes
1 response to drug GO:0042493 9.74 ASS1 CPS1 OTC
2 liver development GO:0001889 9.65 ASS1 CPS1 OTC
3 response to toxic substance GO:0009636 9.59 ASS1 CPS1
4 response to glucocorticoid GO:0051384 9.58 ASS1 CPS1
5 cellular response to cAMP GO:0071320 9.58 ASS1 CPS1
6 response to amino acid GO:0043200 9.55 ASS1 CPS1
7 response to steroid hormone GO:0048545 9.54 ASS1 CPS1
8 cellular amino acid biosynthetic process GO:0008652 9.54 ASL ASS1 OTC
9 cellular response to glucagon stimulus GO:0071377 9.52 ASS1 CPS1
10 response to growth hormone GO:0060416 9.51 ASS1 CPS1
11 response to amine GO:0014075 9.49 ASS1 CPS1
12 citrulline biosynthetic process GO:0019240 9.46 CPS1 OTC
13 arginine biosynthetic process via ornithine GO:0042450 9.43 ASL OTC
14 response to zinc ion GO:0010043 9.43 ASS1 CPS1 OTC
15 cellular response to oleic acid GO:0071400 9.4 ASS1 CPS1
16 urea cycle GO:0000050 9.35 ASL ASS1 CPS1 NAGS OTC
17 midgut development GO:0007494 9.33 ASS1 CPS1 OTC
18 anion homeostasis GO:0055081 9.32 CPS1 OTC
19 cellular amino acid metabolic process GO:0006520 9.26 OTC
20 arginine biosynthetic process GO:0006526 9.02 ASL ASS1 CPS1 NAGS OTC

Molecular functions related to Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to according to GeneCards Suite gene sharing:

# Name GO ID Score Top Affiliating Genes
1 phospholipid binding GO:0005543 9.16 CPS1 OTC
2 catalytic activity GO:0003824 9.13 ASL CPS1 DPYD
3 amino acid binding GO:0016597 8.62 ASS1 OTC

Sources for Ornithine Transcarbamylase Deficiency, Hyperammonemia Due to

3 CDC
7 CNVD
9 Cosmic
10 dbSNP
11 DGIdb
17 EFO
18 ExPASy
20 FMA
29 GO
30 GTR
31 HGMD
32 HMDB
33 HPO
34 ICD10
35 ICD10 via Orphanet
36 ICD9CM
37 IUPHAR
38 KEGG
39 LifeMap
41 LOVD
43 MedGen
45 MeSH
46 MESH via Orphanet
47 MGI
50 NCI
51 NCIt
52 NDF-RT
55 NINDS
56 Novoseek
58 OMIM
59 OMIM via Orphanet
63 PubMed
65 QIAGEN
70 SNOMED-CT via HPO
71 SNOMED-CT via Orphanet
72 TGDB
73 Tocris
74 UMLS
75 UMLS via Orphanet
Content
Loading form....